NNTTTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCCTTCTTTGCCTTTTCTACCTTCAAGCATTTTGTCAC
TGATACCCAATGTCTATACCTCTTTTAAGAGCTGACCAGTGTACAGCCTC
CACTAGATTTCATATGGGCTGTCCGTGTGATCACAGGTTTAAATTCTACT
GGGAAGCCTGCTAGGCTCACCTCTGGACACCAAATTGAAGACAATGACTG
CTCCTTTCCTACAATCTTATAGTCCACAGTTCATCAATAAGGATAGGAAA
CATATACTGCCTCTCAGTGCCTAACTTGACACCTCCAGTCCTTTTTAGGC
TGAGTGCATGTAACCTGTAAATGATATGATTATTGTTGCAAAGGACATGT
GATACTTGCGAGGGTGTCTTCTGGCTCTTAGATTTCCTCTGTCCAGTTGT
CCACTGTGTTCCCTAATCTTTAGAAGTGGTTATATAAAGGATTTAATTAG
GGCTAGATGGCTAACTCTTAGGCTTCTAAGCCTCTTGGGTAGCAAATGGC
ATTAACTGTTATTTTCTTCAGACATGTTTCTGATCAAGCTGAAAGTAGAT
TTTGTTTATGGATAATAGTTATGAATAGTTTTGTTTATGAAAATAGTTAT
TTAAAATTTAGTTTGAAGCTATGCAAATTTAATTAATATTAATAGTATGA
AGTGCCTCCTAGGTCATATGATGTCCCCGAGCATAATTTTTTTG

NNNCCGCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATACTCTGAGGATGTGTTAA
TTGTGGCATTCCAGACTTGTAGACATGAGATTCTTGTTTTCAAGGAATCA
ACTTCTATCTCATCACTATAGGTGCATTGCTATTACTGTTTTTAAGGGAG
CAAGAGAAGACACAGATGTCCACTATTCACAGTTNTTCCCTNCTTCATNN
NTTTAAGAAAATTTAGTTCTCTCTTTAAGAGACAATGNNAAGCAATCATC
ATCATCATGATTTGCTTGTTTCTATGGTGGNGAAAAAAANNNANAAGGNN
TTTTTTTGGCNNTCTCCCCCNNNNNNNNGGNGNAGGGGGGGAGGAGGNAN
NNNNTTTTTTTGTATTTTGGCATTTTGGTGTTTGGGGTGCTGTTGTTTTC
TTCGTTCTCTTCCTTATCTCCGTCTTCGCCCAGGTTTACATTTTTCTACT
TTCCCTTTTGTGTCCTTTCCTTTGTTGTCTTCTCTATTTATCTAATTTGT
TGCCTGTTGTTTTTTTTTTATTAATTTCATCCACAACTGACATTCTTGGT
TTTGTTCGTTTATCCTCCCACTTATTTATTTTTCTCCTACTATTCGGTCG
GCTTAGGAAATATTTTTGTGCGTCTTTTGTATTTTATTTTTTTCCTTTCC
TTCGTAATGATACATTTTTAACCCTACTGTATTCTCTTCCCCCCATGTTA
TTTGTA

Query= MSMg01no527_j04.b1 MSMg01no527_j04.b1 CHROMAT_FILE:
MSMg01no527_j04.b1 PHD_FILE: MSMg01no527_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:51 2005
         (692 letters)



>mm_chr8_51871076_51872167
          Length = 1092

 Score = 1029 bits (532), Expect = 0.0
 Identities = 556/564 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccttctttgccttttctaccttcaagcattttgtcactgatacccaatgtcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattctccttctttgccttttctaccttcaagcattttgtcactgatacccaatgtcta 505

                                                                       
Query: 65  tacctcttttaagagctgaccagtgtacagcctccactagatttcatatgggctgtccgt 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 504 tacctcttttaagagctgaccagtgtacagcctccactagatttcatacgggctgtccgt 445

                                                                       
Query: 125 gtgatcacaggtttaaattctactgggaagcctgctaggctcacctctggacaccaaatt 184
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 444 gtgatcacaggtttaaattctactgggaagcctgctgggctcacttctggacaccaaatt 385

                                                                       
Query: 185 gaagacaatgactgctcctttcctacaatcttatagtccacagttcatcaataaggatag 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 gaagacaatgactgctcctctcctacaatcttatagtccacagttcatcaatatggatag 325

                                                                       
Query: 245 gaaacatatactgcctctcagtgcctaacttgacacctccagtcctttttaggctgagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaacatatactgcctctcagtgcctaacttgacacctccagtcctttttaggctgagtg 265

                                                                       
Query: 305 catgtaacctgtaaatgatatgattattgttgcaaaggacatgtgatacttgcgagggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgtaacctgtaaatgatatgattattgttgcaaaggacatgtgatacttgcgagggtg 205

                                                                       
Query: 365 tcttctggctcttagatttcctctgtccagttgtccactgtgttccctaatctttagaag 424
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 tcttctggctcttagatttcctctgtccagttgtccactgtgttccctaaactttagaag 145

                                                                       
Query: 425 tggttatataaaggatttaattagggctagatggctaactcttaggcttctaagcctctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tggttatataaaggatttaattagggctagatggctaactcttaggcttctaagcctctt 85

                                                                       
Query: 485 gggtagcaaatggcattaactgttattttcttcagacatgtttctgatcaagctgaaagt 544
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 84  gggtagcaaatggcattaactgttatttacttcagacatgtttctgatcaaactgaaagt 25

                                   
Query: 545 agattttgtttatggataatagtt 568
           ||||||||||||||||||||||||
Sbjct: 24  agattttgtttatggataatagtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_j04.g1 MSMg01no527_j04.g1 CHROMAT_FILE:
MSMg01no527_j04.g1 PHD_FILE: MSMg01no527_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:51 2005
         (157 letters)



>mm_chr8_51701183_51701739
          Length = 557

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatactctgaggatgtgttaattgtggcattccagacttgtagacatgagattcttgtt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatactctgaggatgtattaattgtggcattccagacttgtagacatgagattcttgtt 260

                                                                       
Query: 61  ttcaaggaatcaacttctatctcatcactataggtgcattgctattactgtttttaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaggaatcaacttctatctcatcactataggtgcattgctattactgtttttaaggg 320

                                               
Query: 121 agcaagagaagacacagatgtccactattcacagtt 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaagagaagacacagatgtccactattcacagtt 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)