BAC Information

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BAC

Clone NameMSMg01-527L19
Chromosome8 (Build37)
Map Location 84,038,893 - 84,039,555
singlet/doubletsinglet
Overlap genenone
Upstream geneFrem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527L19.T7 (MSMg01no527_l19.b1)MSMg01-527L19.TJ (MSMg01no527_l19.g1)
ACCAG597019AG597020
length753740
length of high quality
(start - end)
666 (51 - 716)663 (78 - 740)
definitionCHROMAT_FILE: MSMg01no527_l19.b1 PHD_FILE: MSMg01no527_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:06 2005CHROMAT_FILE: MSMg01no527_l19.g1 PHD_FILE: MSMg01no527_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACCAGACTTTCAAAGAACAGCTAATACCAATATTTCTCA
AACTATTCCACAAAATAGAAACATAGGAACACTAACTAACTCATTTTATG
AAGCCACACTCAGCCTAATACCTAAACCATACAAAGACTCAACAAAGAAA
GAATTTCAGACCAATTTCTCTTATGAACTTTGATATAAAAATACTCAAAA
ATTCTTACAAGCCAAATCAAAGCAAGATACAGCCAATAACCAACATAAAT
TAAATGCATAGGGATTTAAAAGAAATCCCACTAAAATCAGGGGCAAACAA
AGCTTCCCACTCTCTCACTACCTATTTAGTATAATACTTGAAGTTCTAGC
TAGAGCAATAAAACAAGCAAAGGAGATCAAGGGGATACAAATTGGAAAGG
AAAAAGTCAAAGTATCCCTATTTGTAGATGATATGATAGTATAAGTAACC
AACACAAAAATTCACCAGAGAACTCCTATATCTGATAAACACCTTCAGCA
AAGTGGCTGGATTAAAAAAATAACTCAAAAATATCAATAACCCTCCTTTA
TACAATCTATAAACAGTCAGAGAAAGAAATGATGGAAACAACAACCTTCA
CAATAGCCCATGAATAATAATAATAATAAAATACCTTAATGCAATTCTAA
CCAAGCAAGGGAAAGACCTGTATGATAAGAATTTTAAGTCTCTGAGAAGA
TAA
NTTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCCCTTCCTCTTTTGCAAA
GGTATCACAGACACATTGAAGTCCCCGTGACAGAAAGGTTACTTTTCCCT
CTGAGCTATTTCACCAGGCTTTGATAGAAATGTGGTGACATTGCAACTGC
TGATAACATCAGGATAAGAAGAGGGTGGTGATGGTCCCATTGTCCTTGAT
GTCTGGTGATGAATCTGGGCACATGATTCCTCTTAAGTGCTTATCCCTGT
TCGGTTCTGCAGGTCAGCTGAGCCTCATATACAGGACAGAATGCATCATT
ATCTATCAGGACTTGAATAGGCAGACTGACAAAAGACAAGTCACTTTCTA
TAAACCCCTTTCTCGGTATTGTCTAAAAATATCTTTGAGGGAAATGTGGC
TGGTGTGTTGCTGGGGTGTCTGAGCTCATTTCTTAGTCCTGGCTGTGCTA
TGTGAAGAGCTCACTGTCATCACTGCCCAGAATGGAAAGGGGATGCTGGG
ATGTGTTTTAAGAGTTTAAATTAGCTTCTCTAATGAAGATGAAGCAGCCA
GGGGAGGCCCTCTAGGTTGAGAGGAGGTGACCACTTACCTTTCCTTCTCT
GGCCCTTCTGCCATTTCTCCAGCTGCTCTCTGCAGGAGAGCTCTGATTTC
TTACAAGATTGTTTCCATGTTAAATCGACACTAAATCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_l19.g1 MSMg01no527_l19.g1 CHROMAT_FILE:
MSMg01no527_l19.g1 PHD_FILE: MSMg01no527_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:06 2005
         (663 letters)



>mm_chr8_84038693_84039755
          Length = 1063

 Score = 1282 bits (663), Expect = 0.0
 Identities = 663/663 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttcccttcctcttttgcaaaggtatcacagacacattgaagtccccgtgacagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttcccttcctcttttgcaaaggtatcacagacacattgaagtccccgtgacagaaag 260

                                                                       
Query: 61  gttacttttccctctgagctatttcaccaggctttgatagaaatgtggtgacattgcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttacttttccctctgagctatttcaccaggctttgatagaaatgtggtgacattgcaac 320

                                                                       
Query: 121 tgctgataacatcaggataagaagagggtggtgatggtcccattgtccttgatgtctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgataacatcaggataagaagagggtggtgatggtcccattgtccttgatgtctggt 380

                                                                       
Query: 181 gatgaatctgggcacatgattcctcttaagtgcttatccctgttcggttctgcaggtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgaatctgggcacatgattcctcttaagtgcttatccctgttcggttctgcaggtcag 440

                                                                       
Query: 241 ctgagcctcatatacaggacagaatgcatcattatctatcaggacttgaataggcagact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagcctcatatacaggacagaatgcatcattatctatcaggacttgaataggcagact 500

                                                                       
Query: 301 gacaaaagacaagtcactttctataaacccctttctcggtattgtctaaaaatatctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaaaagacaagtcactttctataaacccctttctcggtattgtctaaaaatatctttg 560

                                                                       
Query: 361 agggaaatgtggctggtgtgttgctggggtgtctgagctcatttcttagtcctggctgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggaaatgtggctggtgtgttgctggggtgtctgagctcatttcttagtcctggctgtg 620

                                                                       
Query: 421 ctatgtgaagagctcactgtcatcactgcccagaatggaaaggggatgctgggatgtgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatgtgaagagctcactgtcatcactgcccagaatggaaaggggatgctgggatgtgtt 680

                                                                       
Query: 481 ttaagagtttaaattagcttctctaatgaagatgaagcagccaggggaggccctctaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaagagtttaaattagcttctctaatgaagatgaagcagccaggggaggccctctaggt 740

                                                                       
Query: 541 tgagaggaggtgaccacttacctttccttctctggcccttctgccatttctccagctgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagaggaggtgaccacttacctttccttctctggcccttctgccatttctccagctgct 800

                                                                       
Query: 601 ctctgcaggagagctctgatttcttacaagattgtttccatgttaaatcgacactaaatc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctctgcaggagagctctgatttcttacaagattgtttccatgttaaatcgacactaaatc 860

              
Query: 661 aag 663
           |||
Sbjct: 861 aag 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)