Query= MSMg01no528_b13.b1 MSMg01no528_b13.b1 CHROMAT_FILE:
MSMg01no528_b13.b1 PHD_FILE: MSMg01no528_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:36 2005
(712 letters)
>mm_chr8_52531758_52532868
Length = 1111
Score = 1266 bits (655), Expect = 0.0
Identities = 694/707 (98%), Gaps = 1/707 (0%)
Strand = Plus / Plus
Query: 5 gaattctctaccttacagtttcaaaatgcagatcaggagcctaaatactaccagacatct 64
||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctctacctaagagtttcaaaatgcagatcaggggcctaaatactaccagacatct 264
Query: 65 tccagtaaagaaggttgtttaacaatgtctgtgtttattcctgtctaactaatggaaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccagtaaagaaggttgtttaacaatgtctgtgtttattcctgtctaactaatggaaaac 324
Query: 125 accatcatccagatttgtgtattgttaaatggattattcagttatatgttttcaaattct 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accatcatccagatttgtgcattgttaaatggattattcagttatatgttttcaaattct 384
Query: 185 tttggatattaggtaataaataactattacattgaaaataagtcaccacacatatgtatg 244
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggatattatgtaataaatagctattacattgaaaataagtcaccacacatatgtatg 444
Query: 245 atatcttttagcatagcatttcataatgattcatctttttttttatatttctttcaaatt 304
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatcttttagtatagcatttcacaatgattcatctttttttttatatttctttcaaatt 504
Query: 305 tattcaaatgctatttgggcatgatattatatataaagaaatcacattgagtaaaattag 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 tattcaaatgctatttgggcatgatattatatataaagaaatcacatcgagtaaaattag 564
Query: 365 acctttttttttaatattccagttggctgaacagcatgaacagtaaaatatatattccta 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acctttttttt-aatattccagttggctgaacagcatgaacagtaaaatatatattccta 623
Query: 425 ctgggaagaagggggaagagattcaccatatgaggtttttgaatgttaaagtatatcttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgggaagaagggggaagagattcaccatatgaggtttttgaatgttaaagtatatcttt 683
Query: 485 ctgtgatttcattttcagcaggaattatgagttttattgaaagacacatgctttcataaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgtgatttcattttcagcaggaattatgagttttattgaaagacacatgctttcataaa 743
Query: 545 tatagttactttctcttgagaaagcaccctaaaactcagagtaatgtgataattataaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatagttactttctcttgagaaagcaccctaaaactcagagtaatgtgataattataaaa 803
Query: 605 agctgtaaaatgtctatagtctgtctgggaagttcctaagtgtgaagcattttctcagtg 664
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 804 agccgtaaaatgtctatagtctgtctgggaagttcctaagtgttaagcattttctcagtg 863
Query: 665 tggcaaaggcatctgttcttggcgcttagctacaatgatgaccaaca 711
|| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgtcaaaggcatctgttcttggcgcttagctacaatgatgaccaaca 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1111
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1101
Effective search space: 772902
Effective search space used: 772902
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no528_b13.g1 MSMg01no528_b13.g1 CHROMAT_FILE:
MSMg01no528_b13.g1 PHD_FILE: MSMg01no528_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:36 2005
(682 letters)
>mm_chr8_52696144_52697225
Length = 1082
Score = 992 bits (513), Expect = 0.0
Identities = 572/623 (91%), Gaps = 48/623 (7%)
Strand = Plus / Minus
Query: 1 ctattccttaacttttatctcaaagctttaaccaaaggcttagaaattgggtaaactatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctattccttaacttttatctcaaagctttaaccaaaggcttagaaattgggtaaactatt 564
Query: 61 acattttatttccattttcaccttttaacttaaagtaattcaaacattcaaatgctgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acattttatttccattttcaccttttaacttaaagtaattcaaacattcaaatgctgctt 504
Query: 121 ggttcttttattcatctttgtgagtgaagaattctgtgccttatgcaaatactatcatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggttcttttattcatctttgtgagtgaagaattctgtgccttatgcaaatactatcatct 444
Query: 181 cttatatagaacagataatatgaatagcagttttcaatctgtgtgttgattactagattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cttatatagaacagataatatgaatagcagttttcaatctgtgtgttgattactagattt 384
Query: 241 tgacaacaaaatttatggtcagtataaattggaaagagagactaaaaactgttattttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgacaacaaaatttatggtcagtataaattggaaagagagactaaaaactgttattttaa 324
Query: 301 attgcgtgtggagatatcaattgtaccagatttatacatttatgaagacaatctttaaat 360
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attgcatgtggagatatcagttgtaccagatttatacatttatgaagacaatctttaaat 264
Query: 361 ataagactaacagttattattgatttaaactgtacataaatgtagtcat----------- 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataagactaacagttattattgatttaaactgtacataaatgtagtcattatatatatat 204
Query: 410 -------------------------------------tatatatatatataatgtgtgtg 432
|||||||||||||||||||||||
Sbjct: 203 atatatatatatatatatatatatatatatatatatatatatatatatataatgtgtgtg 144
Query: 433 tatactctcctctcctccacccagaaccctccctccctctgcctcccttgactattgtat 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tatactctcctctcctccacccagaaccctccctccctctgcctcccttgactattgtat 84
Query: 493 tcctctttctaagagggctttaagcatcctcacttgggccttccttcttgtttaactttt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tcctctttctaagagggctttaagcatcctcacttgggccttccttcttgtttaactttt 24
Query: 553 ttagatgcgtgagacttatcatg 575
||||||| |||||||||||||||
Sbjct: 23 ttagatgtgtgagacttatcatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
