BAC Information

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BAC

Clone NameMSMg01-528E11
Chromosome8 (Build37)
Map Location 37,476,153 - 37,634,815
singlet/doubletdoublet
Overlap gene6430573F11Rik, Dlc1
Upstream geneThex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878
Downstream geneLOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528E11.T7 (MSMg01no528_e11.b1)MSMg01-528E11.TJ (MSMg01no528_e11.g1)
ACCAG597433AG597434
length731733
length of high quality
(start - end)		676 (53 - 728)585 (86 - 670)
definitionCHROMAT_FILE: MSMg01no528_e11.b1 PHD_FILE: MSMg01no528_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:50 2005CHROMAT_FILE: MSMg01no528_e11.g1 PHD_FILE: MSMg01no528_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,476,153 - 37,476,824)(37,634,493 - 37,634,815)
sequence
ATAAAATACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGTTTGGCTAAACTGGCTAATCATCTATTCTCTATTC
TTATACTCATAGTAAAATTATCTACTCTTTATTCACAACTATGTCTTTTC
ATGGTGCACACTGAAGCCTGTGGCCACATCCTTAGATCACAAGATCCAGG
AACTCAGAGCCAACCTGAAATGAAATGCTTTCTTTGATCATTAACATGTC
CCAAGCCTATTTGTCTCTTCCAAGTAGAATTATGTGCTTGCAATGCCTGA
AAGCTCACTGTGTGCCTTTTCTTACCTATGCAACCCTCACTATTCTGCAA
GGGAGGGGGCACAGTGTATTCTTAATTCTAACTTTATTATAACTTAAACC
ACCGCCTTAAACTTTTTTATCAAATACCCCAAGTTCCAAAAACCATTTAA
ATCAAATCAAGAATTTTGCGAAATCATTAATTCATCTAAACAATATTATT
TTATGAAAGTTCATCTTCATAAAATTGAGCTTCAGGAAAATTGCCCAATA
GCGTGGGCTGTCTCCCAAGAAGCTCACTTGCCCACTGAAGCTCCTCCTGC
CTGCATGGTGTCTGCCACTCCTCCAAGGTCACCTTCGCAGTGCCACCATT
TGTCATGGAATGGTGGCTGGAGACCTTGATTTACTGCCCTGGTTACATTC
TACAAGAAGGTTTCATTCTATAGACAACATA

CCAAAATATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGC
TATACAGAGGAACCCTGTCTCAAAAAACATTAAAACAAACAAACAAACAA
ACAAAACGTTCAGAGACTGTGTGACTGAGCATTTCCACCCTCTCTTAGTC
AGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAACAAATTAGGGAG
GAAAGGGTTTATTCAGCTTACACTTCTACACTGCTGTTCATCACCAAAGG
AAATCAAGGCAGGAACTTAAGAAACCTGGAGGCAGGAGCTGATGCAGAGG
CTATGGAGGGATGCTGCTTACAGGACCACCAGCCCAGGGATGGCACCACC
CACAGTGGGCTGAGCCCTCTCCTATTGATTACTGATTGAAAAAATGCCTC
AGAGCTGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTTTCTCTGT
AATAGCTCCAGCTTGAGTCAAGTTGACACACAAACCCAGCCAGCACACAC
CCCACGCAGGTTGTCCACACAGAGTCCATGCGCAGGGGTTGGGAGGATCC
CAGGACAGAGGGACCATTTTCAAGCTGGCTTCTGAGAAATCTCATTTCCC
CTTTGGTTTTGTCTCCGCAGGACCTGGAGGACTAACTTACCCAGGGGGGC
CTGTGCTCTCTTACTCACCTCTGTGGATCACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_e11.b1 MSMg01no528_e11.b1 CHROMAT_FILE:
MSMg01no528_e11.b1 PHD_FILE: MSMg01no528_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:50 2005
         (676 letters)



>mm_chr8_37475949_37477024
          Length = 1076

 Score = 1299 bits (672), Expect = 0.0
 Identities = 672/672 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttggctaaactggctaatcatctattctctattcttatactcatagtaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttggctaaactggctaatcatctattctctattcttatactcatagtaaa 264

                                                                       
Query: 65  attatctactctttattcacaactatgtcttttcatggtgcacactgaagcctgtggcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attatctactctttattcacaactatgtcttttcatggtgcacactgaagcctgtggcca 324

                                                                       
Query: 125 catccttagatcacaagatccaggaactcagagccaacctgaaatgaaatgctttctttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catccttagatcacaagatccaggaactcagagccaacctgaaatgaaatgctttctttg 384

                                                                       
Query: 185 atcattaacatgtcccaagcctatttgtctcttccaagtagaattatgtgcttgcaatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcattaacatgtcccaagcctatttgtctcttccaagtagaattatgtgcttgcaatgc 444

                                                                       
Query: 245 ctgaaagctcactgtgtgccttttcttacctatgcaaccctcactattctgcaagggagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaaagctcactgtgtgccttttcttacctatgcaaccctcactattctgcaagggagg 504

                                                                       
Query: 305 gggcacagtgtattcttaattctaactttattataacttaaaccaccgccttaaactttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggcacagtgtattcttaattctaactttattataacttaaaccaccgccttaaactttt 564

                                                                       
Query: 365 ttatcaaataccccaagttccaaaaaccatttaaatcaaatcaagaattttgcgaaatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttatcaaataccccaagttccaaaaaccatttaaatcaaatcaagaattttgcgaaatca 624

                                                                       
Query: 425 ttaattcatctaaacaatattattttatgaaagttcatcttcataaaattgagcttcagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaattcatctaaacaatattattttatgaaagttcatcttcataaaattgagcttcagg 684

                                                                       
Query: 485 aaaattgcccaatagcgtgggctgtctcccaagaagctcacttgcccactgaagctcctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaattgcccaatagcgtgggctgtctcccaagaagctcacttgcccactgaagctcctc 744

                                                                       
Query: 545 ctgcctgcatggtgtctgccactcctccaaggtcaccttcgcagtgccaccatttgtcat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgcctgcatggtgtctgccactcctccaaggtcaccttcgcagtgccaccatttgtcat 804

                                                                       
Query: 605 ggaatggtggctggagaccttgatttactgccctggttacattctacaagaaggtttcat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaatggtggctggagaccttgatttactgccctggttacattctacaagaaggtttcat 864

                       
Query: 665 tctatagacaac 676
           ||||||||||||
Sbjct: 865 tctatagacaac 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_e11.g1 MSMg01no528_e11.g1 CHROMAT_FILE:
MSMg01no528_e11.g1 PHD_FILE: MSMg01no528_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:50 2005
         (585 letters)



>mm_chr8_37633831_37634815
          Length = 985

 Score =  625 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Minus

                                                                       
Query: 263 aggctatggagggatgctgcttacaggaccaccagcccagggatggcaccacccacagtg 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 aggctatggagggatgctgcttacaggaccaccagcccagggatggcaccacccacagtg 926

                                                                       
Query: 323 ggctgagccctctcctattgattactgattgaaaaaatgcctcagagctggatctcatgg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ggctgagccctctcctattgattactgattgaaaaaatgcctcagagctggatctcatgg 866

                                                                       
Query: 383 aggcatttcctcaagggaggctcctttctctgtaatagctccagcttgagtcaagttgac 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aggcatttcctcaagggaggctcctttctctgtaatagctccagcttgagtcaagttgac 806

                                                                       
Query: 443 acacaaacccagccagcacacaccccacgcaggttgtccacacagagtccatgcgcaggg 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acacaaacccagccagcacacaccccacgcaggttgtccacacagagtccatgcgcaggg 746

                                                                       
Query: 503 gttgggaggatcccaggacagagggaccattttcaagctggcttctgagaaatctcattt 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttgggaggatcccaggacagagggaccattttcaagctggcttctgagaaatctcattt 686

                                  
Query: 563 cccctttggttttgtctccgcag 585
           |||||||||||||||||||||||
Sbjct: 685 cccctttggttttgtctccgcag 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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