Query= MSMg01no528_f13.b1 MSMg01no528_f13.b1 CHROMAT_FILE:
MSMg01no528_f13.b1 PHD_FILE: MSMg01no528_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
(670 letters)
>mm_chr8_94965157_94966226
Length = 1070
Score = 1261 bits (652), Expect = 0.0
Identities = 661/666 (99%), Gaps = 4/666 (0%)
Strand = Plus / Plus
Query: 9 gaattcaatccaatgaatacacagtagaaggagaaccctaactccagcaagctgtgctct 68
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcaatccaaggaatacacagtagaaggagaaccctaactccagcaagctgtgctct 268
Query: 69 ctttcacatgtgcactgtgacacacgtgctcatgatcaaacatgttagatctatgcaagc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctttcacatgtgcactgtgacacacgtgctcatgatcaaacatgttagatctatgcaagc 328
Query: 129 aaatgatgatgatgatggtgatgacgacaacgacgacgatgatgataatgatgaagaaga 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaatgatgatgatgatggtgatgacgacaacgacgacgatgatgataatgatgaagaaga 388
Query: 189 tgatgatgatagtaataattttttctggaacgttctgcctacttttggacttcacttaac 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgatgatgatagtaataattttttctggaacgttctgcctacttttggacttcacttaac 448
Query: 249 tttgggtcactgaaactttgtagagaggggaacttggactaaagcagggaatggctcttg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttgggtcactgaaactttgtagagaggggaacttggactaaagcagggaatggctcttg 508
Query: 309 taagtcttatcagaaggtcagaatatacatttacagtcctgatatcctgcactctgttca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taagtcttatcagaaggtcagaatatacatttacagtcctgatatcctgcactctgttca 568
Query: 369 catatgaccatatcacacccattcattgaaacacagagtcacatggaacggaagcacact 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catatgaccatatcacacccattcattgaaacacagagtcacatggaacggaagcacact 628
Query: 429 cct----gcccagggtcctctccctctggatgatagtgccacagcactgctccttaagtg 484
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ccttcctgcccagggtcctctccctctggatgatagtgccacagcactgctccttaagtg 688
Query: 485 aaaatgccttcatgacgcatggacacccacagctcttcgtgttgtccacacacagagcat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaaatgccttcatgacgcatggacacccacagctcttcgtgttgtccacacacagagcat 748
Query: 545 cactctaatccttccgtaaagtggtagcctatttccttaaaaagcaacacagttgattaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cactctaatccttccgtaaagtggtagcctatttccttaaaaagcaacacagttgattaa 808
Query: 605 tttcttctccctgggtttctcccttgtcaaaggggaggaagagttgtcttgtttgtgtgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tttcttctccctgggtttctcccttgtcaaaggggaggaagagttgtcttgtttgtgtgt 868
Query: 665 cagacc 670
||||||
Sbjct: 869 cagacc 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_f13.g1 MSMg01no528_f13.g1 CHROMAT_FILE:
MSMg01no528_f13.g1 PHD_FILE: MSMg01no528_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
(619 letters)
>mm_chr8_95074793_95075811
Length = 1019
Score = 1197 bits (619), Expect = 0.0
Identities = 619/619 (100%)
Strand = Plus / Minus
Query: 1 cagacgaggaagccagggcttaagaaaaccactctgaactctaacaatactgatttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cagacgaggaagccagggcttaagaaaaccactctgaactctaacaatactgatttcctg 760
Query: 61 tcctgccaactgcatgagcaggtgtgagtccggtgagagagatgaggtgtaaagagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcctgccaactgcatgagcaggtgtgagtccggtgagagagatgaggtgtaaagagaaag 700
Query: 121 gatttagtttggcatgctttgggagttctgatccataatactgttggtactgttactcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gatttagtttggcatgctttgggagttctgatccataatactgttggtactgttactcgg 640
Query: 181 gtggtctcctttgcagtactggacacatggtgaagcaatactgcttacatcattactgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gtggtctcctttgcagtactggacacatggtgaagcaatactgcttacatcattactgga 580
Query: 241 atctgagaagggagagggaaagatacacagactagtctcttcaagggagctatcccaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atctgagaagggagagggaaagatacacagactagtctcttcaagggagctatcccaaag 520
Query: 301 tcctaacacctccccttactgtataagattcccccttctccctgtgtatcacagggaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tcctaacacctccccttactgtataagattcccccttctccctgtgtatcacagggaccc 460
Query: 361 aagcctttgacatacaaatgcctaggagctttcaagatttaaactatagcatcctgcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aagcctttgacatacaaatgcctaggagctttcaagatttaaactatagcatcctgcctc 400
Query: 421 ccttcccattggtctcgatagactctcggtgtcttctcggtgtcttcatttataagacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccttcccattggtctcgatagactctcggtgtcttctcggtgtcttcatttataagacag 340
Query: 481 caggtgcctagtgagacagagggtctttcatctgctcaccaaagtatgctagctaaagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caggtgcctagtgagacagagggtctttcatctgctcaccaaagtatgctagctaaagac 280
Query: 541 tgttcaaatacatatgaatgattcttcaaagtcttgacattggctcagttgggattcagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgttcaaatacatatgaatgattcttcaaagtcttgacattggctcagttgggattcagg 220
Query: 601 gtctagagtttgacctcaa 619
|||||||||||||||||||
Sbjct: 219 gtctagagtttgacctcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
