Query= MSMg01no528_i18.b1 MSMg01no528_i18.b1 CHROMAT_FILE:
MSMg01no528_i18.b1 PHD_FILE: MSMg01no528_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:10 2005
(683 letters)
>mm_chr8_83212561_83213645
Length = 1085
Score = 1236 bits (639), Expect = 0.0
Identities = 672/683 (98%), Gaps = 4/683 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttggtacaaaaaaa-gaagatggcctggacgcccttctctggatgcttcctgt 62
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttggtacaaaaaaaagaagatggcctggacgcccttctctggatgcttcctgt 263
Query: 63 taccagtttgcaggagccattcccacaattacaaactaggcaggctcttatggaagcaca 122
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatcagtttgcaggaaccattcccacaattacaaactaggcaggctcttatggaagcaca 323
Query: 123 gcttatagaattcacaatttcttgagaaaaattcaacgtggctcccagagctgaaactct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcttatagaattcacaatttcttgagaaaaattcaacgtggctcccagagctgaaactct 383
Query: 183 gggttccctgttcccagtaatgtctcatcaaagctttgaagaacacacagccatcaaaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggttccctgttcccagtaatgtctcatcaaagctttgaagaacacacagccatcaaaag 443
Query: 243 agctcaaaccagctcggagaaaatcaccagtgaatcactcgtgccgcgtggagcaggcac 302
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctcaaaccagctcagagaaaatcaccagtgaatcactcgtgccgcgtggagcaggcac 503
Query: 303 agcgc-aggctcctaggtgtaactgggaaacagggaacgccatggagctggttccagtga 361
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agctcgag-ctcctaggtgtaactgggaaacagggaacgccatggagctggttccagtga 562
Query: 362 cttctggagaacaaaagcagactccaatcagactgtgctggaagaggtctagtgtgccag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttctggagaacaaaagcagactccaatcagactgtgctggaagaggtctagtgtgccag 622
Query: 422 ggcagaaccttctggaaggtttacctgcatctctaagttctactaaaatgagtcatgaac 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 ggcagaaccttctggaaggtttacctgcatctctaagttctaccaaaatgagtcatgaac 682
Query: 482 acacatgatcctttaactctgctttctgctctccagactcttgtttacttggattaaaca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acacatgatcctttaactctgctttctgctctccagactcttgtttacttggattaaaca 742
Query: 542 cacacaccctcactacactcacaggtatacttacaagcacgttatctccttgactccatc 601
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 743 cacacaccctcactacactcacaggtatacttacaagcatgttatctccttgactccatc 802
Query: 602 cctgtggttttctgtctttccatgtccagagttattattcctccatgatgaagcttcctc 661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 803 cctgtggttttctgtctttccatctccagagttattattcctccatgatgaagcttcctc 862
Query: 662 acttttaggaaaaaaaaa-gttt 683
|||||||||||||||||| ||||
Sbjct: 863 acttttaggaaaaaaaaatgttt 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1085
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1075
Effective search space: 723475
Effective search space used: 723475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_i18.g1 MSMg01no528_i18.g1 CHROMAT_FILE:
MSMg01no528_i18.g1 PHD_FILE: MSMg01no528_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:10 2005
(629 letters)
>mm_chr8_83384673_83385701
Length = 1029
Score = 1178 bits (609), Expect = 0.0
Identities = 621/625 (99%)
Strand = Plus / Minus
Query: 5 ttcatgtggaaagctggcttttgttgttgctgataatacaggatttccttcagagaattt 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 829 ttcatgtggaaagctggcttttgttgttgctaataatacaggatttccttcagagaattt 770
Query: 65 ttaatgtcttgttcagataccacacagagagatattgaccacaaatattaatactggttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ttaatgtcttgttcagataccacacagagagatattgaccacaaatattaatactggttt 710
Query: 125 gggagatatgttaatgtgatgttgtccctacctttattaaactgaccatcttaataactc 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gggagatatgttgatgtgatgttgtccctacctttattaaactgaccatcttaataactc 650
Query: 185 catccatcgtggcaccgacacctctgcttttctacttactgtgttccttacaactcctag 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 catccatcttggcaccgacacctctgcttttctacttactgtgttccttacaactcctag 590
Query: 245 gccttagagcagtgctgactacattacccgtcctcttccctctcttctatcttccacccc 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gccttagagcggtgctgactacattacccgtcctcttccctctcttctatcttccacccc 530
Query: 305 gccctgcccccctttctccagggcttacttccacaggagcactccatcctcccaaggacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gccctgcccccctttctccagggcttacttccacaggagcactccatcctcccaaggacc 470
Query: 365 ctgcccatctgcctacaagatctgcgagcatcttcgtatctgccttgtaagtgttgagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctgcccatctgcctacaagatctgcgagcatcttcgtatctgccttgtaagtgttgagga 410
Query: 425 tcattactgtcattatggggagcagaggccacgcccgtgtgctgctcagagcccaagtga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcattactgtcattatggggagcagaggccacgcccgtgtgctgctcagagcccaagtga 350
Query: 485 gttgggtcagtagatccttagctgctgaagcaaacaggagggctagtgctgtgtgctggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gttgggtcagtagatccttagctgctgaagcaaacaggagggctagtgctgtgtgctggt 290
Query: 545 ggtgacagagccagcttctctcactgacgctggcaacccaggaaggtgctcttcatggct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggtgacagagccagcttctctcactgacgctggcaacccaggaaggtgctcttcatggct 230
Query: 605 gccactccgctctaagcactgaaga 629
|||||||||||||||||||||||||
Sbjct: 229 gccactccgctctaagcactgaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
