Query= MSMg01no528_p05.b1 MSMg01no528_p05.b1 CHROMAT_FILE:
MSMg01no528_p05.b1 PHD_FILE: MSMg01no528_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:43 2005
(687 letters)
>mm_chr8_14718599_14719685
Length = 1087
Score = 1243 bits (643), Expect = 0.0
Identities = 666/675 (98%), Gaps = 3/675 (0%)
Strand = Plus / Minus
Query: 13 gaggaattcggcagctgtctaggagtgtatcctgtggatgaggtgccgcagggagggaac 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggaattcggcagctgtctaggagtgtatcctgtggatgaggtgccgcagggagggaac 622
Query: 73 agtgcctctgcagagcagcagactgcacaagtggtcatgcacagcagaaagtgagcagga 132
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 621 agtgcctctgcagagcagcagactgcacgagtggtcatgcatggcagaaagtgagcagga 562
Query: 133 gcatggccatattgtcactgagcctctcctcttgacaggtgaggccttcacgtttgaagc 192
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gcatggccatattgtcactgagcctctcctcttgagaggtgaggccttcacgtttgaagc 502
Query: 193 actggcattattcagaaaatgcccaggaaaatcatgcttactacacacagcctgctgaga 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actggcattattcagaaaatgcccaggaaaatcatgcttactacacacagcctgctgaga 442
Query: 253 gttcctgaaaatgtttaaaaagcataggctcagactcaaggctcacagtcatctgtctgt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcctgaaaatgtttaaaaagcataggctcagactcaaggctcacagtcatctgtctgt 382
Query: 313 cttcctacacattcaggccagttcatctgtccactttccaccttataccaagcactgaag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctacacattcaggccagttcatctgtccactttccaccttataccaagcactgaag 322
Query: 373 tttcctagggactaagcaagtgtcattattctgggttgtactttgttggtagtggatgaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctagggactaagcaagtgtcattattctgggttgtactttgttggtagtggatgaa 262
Query: 433 tgagtgacacttggctaaatagaagaaatgggtcactagtattaaaaaataaaacaaaac 492
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgagtgacacttggctaaatagaagaaatgggtcactagtattaaaaaacaaaacaaaac 202
Query: 493 aacaacatcatcatcaacaacaacaacaaagaaaccaaaccaactaatagctgagccctg 552
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aacaacatcatcatcatcaacaacaac---gaaaccaaaccaactaatagctgagccctg 145
Query: 553 gtcaaccagcataaacctgtgttctagatgaagaaagtgacatgcaaagaggccaatggc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gtcaaccagcataaacctgtgttctagatgaagaaagtgacatgcaaagaggccaatggc 85
Query: 613 ctggagtcacacagatggattgggaaattttgtttcatggaatgaggctcagaaaaattg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctggagtcacacagatggattgggaaattttgtttcatggaatgaggctcagaaaaattg 25
Query: 673 ttaccacagagacca 687
|||||||||||||||
Sbjct: 24 ttaccacagagacca 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_p05.g1 MSMg01no528_p05.g1 CHROMAT_FILE:
MSMg01no528_p05.g1 PHD_FILE: MSMg01no528_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:43 2005
(663 letters)
>mm_chr8_14569032_14570094
Length = 1063
Score = 1195 bits (618), Expect = 0.0
Identities = 652/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Plus
Query: 1 catcaaatctatagaggccaaaaaagtaaatcccccaattcttccagaaaccaaaatagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaaatctatagaggccaaaaaagtaaatcccccaattcttccagaaaccaaaatagt 260
Query: 61 aaggagcagtttcctacatccctggagaccaacgtcaccttgaaatcaaaggcggtagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggagcagtttcctacatccctggagaccaacgtcaccttgaaatcaaaggcggtagag 320
Query: 121 aggttaaagggcagaaatctacaggagaatatgaacatagatgtcagcatcctcccccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggttaaagggcagaaatctacaggagaatatgaacatagatgtcagcatcctcccccaa 380
Query: 181 gaccatcaaaccgagcg--ccgcatcctgttgattggatgaaatatgtaaccaagtggga 238
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccatcaaaccgagcgtgccgcatcctgttgattggatgaaatatgtaaccaagtggga 440
Query: 239 cctttcccaggaatgtgaagtagttcacaagtattagtaccatatcaggagggaaaaaaa 298
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 441 cctttcccaggaatgtgaagtagttcataagcattagtaccatatcaggagggaaaaaaa 500
Query: 299 atctacccgaacatctcaactacagagggaaaggcatctgagaaaatgtacacattttct 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 -tctacccgaacatctcaactacagagggaaaggcatctgagaaaatgtacacattt-ct 558
Query: 359 cagaaaacaggaatagaaggaaaattcttcagcagaatgaagcacatgtatgaaacccca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagaaaacaggaatagaaggaaaattcttcagcagaatgaagcacatgtatgaaacccca 618
Query: 419 tagcctaggcatttggcctctggtttagcacaatacaaagataaaggaacaggtaaacac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tagcctaggcatttggcctctggtttagcacaatacaaagataaaggaacaggtaaacac 678
Query: 479 tacagtgcccctgtatctgtggctgagaaggtggagctggaatgcagaaggcgattgctg 538
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct: 679 tacagtgcccctgtgtctgtggctgagaaggtggagctcgagtgcagaaggcgatggctg 738
Query: 539 cagaaggtaaagggaatgggagcaggatctctgttcctgtggctggagactgccttctgc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagaaggtaaagggaatgggagcaggatctctgttcctgtggctggagactgccttctgc 798
Query: 599 cttcacacccaggaagggacagctagagaaacaggaattcagggagggtcccagatatga 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 799 cttcacacccaggaagggacagctagagaaacaggaattcagggagggttccagatatga 858
Query: 659 tgga 662
||||
Sbjct: 859 tgga 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
