Query= MSMg01no529_b22.b1 MSMg01no529_b22.b1 CHROMAT_FILE:
MSMg01no529_b22.b1 PHD_FILE: MSMg01no529_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:57 2005
(741 letters)
>mm_chr8_66993750_66994890
Length = 1141
Score = 1336 bits (691), Expect = 0.0
Identities = 719/731 (98%), Gaps = 5/731 (0%)
Strand = Plus / Plus
Query: 10 ggaattcagcaaaatataatagacacctcacagtcatggtgattccctgaaatgcaaact 69
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattcagcaaaatagaatagacacctcacagtcatggtgattccctgaaatgcaaact 269
Query: 70 gatgggattctagtggaaatgcttaccaaaggccttgcagaatgttcttccaggagtcat 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gatgggattctagtggaaatgcttaccaaaggccttgcagaatgttcttccaggagtcat 329
Query: 130 ttgcattactgataattgtaaagtgctgcgctgagaggatgaagtccttacttctttggt 189
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttgcattattgataattgtaaagtgctgcgctgagaggatgaagtccttacttctttggt 389
Query: 190 ttcataagggcacaagtactaaggaagatttgtatttcttgcttcctaaagaaatatgaa 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttcataagggcacaagtactaaggaagatttgtatttcttgcttcctaaagaaatatgaa 449
Query: 250 agaaatgggtttttttgttttgttttgttttgttttgttttgtttctgcttgttaaactc 309
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 450 agaaatgagtttttttgttttgttttgttttgttttgttt-----ctgcttgttaaactc 504
Query: 310 actagagaacaaattccaactaggcaacagcgcaggttggatatttagactattaatatt 369
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accagagaacaaattccaactaggcaacagcgcaggttggatatttagactattaatatt 564
Query: 370 aacctttgtcagtgatggtagtttggttaggttccagattacttaagactgttttttcac 429
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 aacctttgtcggtgatggtagtttggttaggttccagattccttaagactgttttttcac 624
Query: 430 cacatagcccaggcttgccttgaattcattatgtaacacagacagaagatatcatattct 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacatagcccaggcttgccttgaattcattatgtaacacagacagaagatatcatattct 684
Query: 490 tataggttaataaaaaataacttaaatggcatcctaaaatcacatctaacctggtagaga 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tataggttaataaaaaataacttaaatggcatcctaaaatcacatctaacctggtagaga 744
Query: 550 aatgacatttccatatggaaaagttgtaagattttataaaagctacatcctgatggtaag 609
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 aatgacatttccatatggaaaagttgtgagattttataaaagctacatcctgatggtaag 804
Query: 610 tggagagccccttattttcccaaccctactgatagcgaatacaaggctcagaactaaata 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggagagccccttattttcccaaccctactgatagcgaatacaaggctcagaactaaata 864
Query: 670 tgggagcatcaagatacttcctcatgggtcccacgagccaaggaagagaaggaacatgaa 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tgggagcatcaagatacttcctcatgggtcccacgagccaaggaagagaaggaacatgaa 924
Query: 730 acaatgctggt 740
|||||||||||
Sbjct: 925 acaatgctggt 935
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1141
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1131
Effective search space: 826761
Effective search space used: 826761
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no529_b22.g1 MSMg01no529_b22.g1 CHROMAT_FILE:
MSMg01no529_b22.g1 PHD_FILE: MSMg01no529_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:57 2005
(666 letters)
>mm_chr8_67167730_67168795
Length = 1066
Score = 1069 bits (553), Expect = 0.0
Identities = 635/697 (91%), Gaps = 57/697 (8%)
Strand = Plus / Minus
Query: 3 gaacagggaaaaggagggagatgtctctggggagacggttccatcagtaaagtgcttgtt 62
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 747 gaacagggaaaaggagggagatgtctctggggagacggttccataagtaaaatgcttgtt 688
Query: 63 acccaagcatgacgccctgaacaggatccctcagaactcatggacaacactgagcagagc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acccaagcatgacgccctgaacaggatccctcagaactcatggacaacactgagcagagc 628
Query: 123 acagttgtaagcccagtgctggtgatgcactgatggggcacttggggctggtgatgcact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acagttgtaagcccagtgctggtgatgcactgatggggcacttggggctggtgatgcact 568
Query: 183 gatgggg-----------------------------cacttagggctggagctggccggc 213
||||||| ||||||||||||||||||||||||
Sbjct: 567 gatggggcacttggggctggtgatgcactgatgggacacttagggctggagctggccggc 508
Query: 214 caattcaactgatctgacaagccccgggttcagcaagacaccctgtatcaaagactcggg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caattcaactgatctgacaagccccgggttcagcaagacaccctgtatcaaagactcggg 448
Query: 274 tttggaatgattgagcaaggtacctaatgttggcttcgtaccctctcatgtacatgctag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttggaatgattgagcaaggtacctaatgttggcttcgtaccctctcatgtacatgctag 388
Query: 334 caagcaaggaatcatgcacacaaacacatacacacacatacaaatacacacacaca--ta 391
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 387 caagcaaggaatcatgcgcacaaacacatacacacacatacaaatacacacacacacata 328
Query: 392 tactacacacacacatacacacacatacaaatacatacacacacacatacacacacacac 451
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 327 tactacacacacacatacacacacatagaaatacatacacacacacatacacacacacac 268
Query: 452 acacatacaccacacacacac--acacacacacacacacacacacacacacacacacaca 509
||||| ||||||||||| | || ||||||||||||||
Sbjct: 267 acaca-----cacacacacacttatac-------------------cacacacacacaca 232
Query: 510 cacagaggaaattccattttaaattcatcagtaagggttatctaaatatattctgtgatt 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cacagaggaaattccattttaaattcatcagtaagggttatctaaatatattctgtgatt 172
Query: 570 ttttaacaggaaacagcttgatttttggtttgctaaagtatgtatgaaagaagcctttat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttttaacaggaaacagcttgatttttggtttgctaaagtatgtatgaaagaagcctttat 112
Query: 630 taacttgtatctgaggagtagaatccaaataatcaga 666
|||||||||||||||||||||||||||||||||||||
Sbjct: 111 taacttgtatctgaggagtagaatccaaataatcaga 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 147
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
