Query= MSMg01no529_h13.b1 MSMg01no529_h13.b1 CHROMAT_FILE:
MSMg01no529_h13.b1 PHD_FILE: MSMg01no529_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:27 2005
(651 letters)
>mm_chr8_12500921_12501971
Length = 1051
Score = 1207 bits (624), Expect = 0.0
Identities = 642/648 (99%), Gaps = 2/648 (0%)
Strand = Plus / Minus
Query: 5 gaattaaaatgaattaacttaaagcattttcactgatgacggacaatatgtctccccaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 851 gaattaaaatgaattaacttaaagcattttcactgatgacggacaatatgtttccccaaa 792
Query: 65 taattcagcctaatttccttttaatcagcatgaccatcacctgctgtaaaaaagaatttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 taattcagcctaatttccttttaatcagcatgaccatcacctgctgtaaaaaagaatttg 732
Query: 125 taactgcgcttaggtggtattgaagaggaagctggggagaggtttatctcccagtgcagt 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 731 taactgcgcttaggtggtattgaagaggaagctgggaagaggtttatctcccagtgcagt 672
Query: 185 gatatttatgaatcagagggggtcatgtgtgcatgcaggtaccttctgtgtgcatgtgtt 244
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gatatttatgaat-agggggggtcatgtgtgcatgcaggtaccttctgtgtgcatgtgtt 613
Query: 245 ctctgcaggtgcttcagtgtgcactgtctgtgcctgcctaagcacctgtgtgtggatgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctctgcaggtgcttcagtgtgcactgtctgtgcctgcctaagcacctgtgtgtggatgtg 553
Query: 305 tctgatttgtgtgtctgctccttgtgcttgggagtgattatgtacaagtatgtgggtggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tctgatttgtgtgtctgctccttgtgcttgggagtgattatgtacaagtatgtgggtggt 493
Query: 365 gtgtatgtacaaatgaggttttgtgtgcatgcatgcgtatataaacttgaggcccttgtg 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 492 gtgtatgtacaaatgaggttttgtgtgcatgcatgcgtatataaactcgaggcccttgtg 433
Query: 425 aaggtgtagctgtgtgtggaggcacatgcacttatgtgttgttatgtatacatgtgctac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaggtgtagctgtgtgtggaggcacatgcacttatgtgttgttatgtatacatgtgctac 373
Query: 485 cttgtgggtatgcatttatttgccctcgtgggtgcatctgcaagtgcacgcgtgcgtata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttgtgggtatgcatttatttgccctcgtgggtgcatctgcaagtgcacgcgtgcgtata 313
Query: 545 catgcgcatgcattcatgtgtgtcgggatgggcagttctgcccagggaagtatggaagga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 catgcgcatgcattcatgtgtgtcgggatgggcagttctgcccagggaagtatggaagga 253
Query: 605 atggatat-gaacttgggtttgcagtgggcatgggtgctatcgggtgc 651
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atggatatggaacttgggtttgcagtgggcatgggtgctatcgggtgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_h13.g1 MSMg01no529_h13.g1 CHROMAT_FILE:
MSMg01no529_h13.g1 PHD_FILE: MSMg01no529_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:27 2005
(666 letters)
>mm_chr8_12463931_12464997
Length = 1067
Score = 1228 bits (635), Expect = 0.0
Identities = 659/667 (98%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 1 attttgggtttcagcaaggccagaccctaaggccaccaccctcctccacttaccagctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgggtttcagcaaggccagaccctaaggccaccaccctcctccacttaccagctgg 260
Query: 61 acacatctctacgaagacatttttcctgatattttaagtctggttacgagttgtgcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatctctacgaagacatttttcctgatattttaagtctggttacgagttgtgcagtt 320
Query: 121 tatattggggaggcgggataagtatccgatcccttctttttatttactagttgttaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatattggggaggcgggataagtatccgatcccttctttttatttactagttgttaagat 380
Query: 181 aatgaatcattcattagcatcttccactggcaccaattatttttcagtttaattaagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaatcattcattagcatcttccactggcaccaattatttttcagtttaattaagaac 440
Query: 241 tcatgggcttaagcagatgtgttgagttgcaattgctgccgttacattctgacgatcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgggcttaagcagatgtgttgagttgcaattgctgccgttacattctgacgatcaaa 500
Query: 301 ttgtctgctcctggccgtcagaagcttgcttgcccatatctgtctgtctgtcaccctggg 360
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ttgtctgctcctggccatcagaagcttgcttgcccatatctgtctgtctgtcaccccgga 560
Query: 361 ggtgggacagacaccccagctctggctgtccagaggagcctcaaagagctgcttctccaa 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgggacagacaccccagctctagctgtccagaggagcctcaaagagctgcttctccaa 620
Query: 421 gaaatctggcttgttttagttgagttgtgtctgacatgatctctggcccagacaccctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatctggcttgttttagttgagttgtgtctgacatgatctctggcccagacaccctcc 680
Query: 481 atgcccatgtgcattac-cagatctgtatttaccttcctgtattaagactccaggagcaa 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcccatgtgcattacgcagatctgtatttaccttcctgtattaagactccaggagcaa 740
Query: 540 gcacacacaaggtagcatctacctcttgtcaccaaatgggctgtagaaacgttgattcca 599
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 gcacacacaaggtggcatctacctcttgtcaccaagtgggctgtagaaacgttgattcca 800
Query: 600 gcatctgaagagtgagttccttcaaatggacgcaacagaagctacagtcagttgcatgtg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 gcatctgaagagtgagttccttcaaatggacgcaacagaagctacagtcagttccatgtg 860
Query: 660 ctgccaa 666
|||||||
Sbjct: 861 ctgccaa 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
