BAC Information

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BAC

Clone NameMSMg01-530D15
Chromosome8 (Build37)
Map Location 107,967,099 - 107,967,809
singlet/doubletsinglet
Overlap geneLrrc36
Upstream geneCcdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19
Downstream gene2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530D15.T7 (MSMg01no530_d15.b1)MSMg01-530D15.TJ (MSMg01no530_d15.g1)
ACCAG598914AG598915
length770789
length of high quality
(start - end)		715 (48 - 762)345 (79 - 423)
definitionCHROMAT_FILE: MSMg01no530_d15.b1 PHD_FILE: MSMg01no530_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:28 2005CHROMAT_FILE: MSMg01no530_d15.g1 PHD_FILE: MSMg01no530_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTATTCTCTCTGAAATAGGTTCTGATTAGATATTATTCTCTT
TTTACAAATGAGGCAATCAAGGTAGAAAGAGCCAGTCTTGAAAGGACAAA
TCAGGGTGGTCTGATTAGAGCCCAGGAGATGTGTATAAAACCAGAGTCTA
TTCTCAGCATCTCCTGTGGAAGGGGATTGTTGAATTGATGTTAGGCTTCA
CCGTTTACTCAATGGGAAGTGTGCAAAATACGTTTCGACTTCTGAGTGTC
TACAGAACACTTCAAAACTTACGAGACCATTTTGTACCCATGGTCTTGTT
TTTGCCTCCCTTTGCTGCTGAAAGACGGGTAGTATAAGTCTCATCAGCAT
TGCTGAACTAACAAAGTGAGGGAATTCAGAGAGCTGATGAAGCAACCTGC
CCAGGTTCTCATAGTTTCTAAGCGGTGACGCCATGAGTTAACCCCAGGTC
TTGTGATACCTTAGTATCTTTTTTATAAGACATGCTACCTTTGAACTATG
TTGGGACTTCACTGTATTCCTTTCCTTTTAATATAGACGCAAACAAAGGA
CTTTTTATTCCCTTCCCCAACCGGGAAATAAAGGATTCCCTAACCAGCAT
TTGTGCAGCCCAGGGCAGTGGCACACCAGCTCAGAAATTAGACGTTTTTC
CGCTGGGGACACAGGTAATCCACTCACTCTCCTGCCGAATGACCAATACT
AATAATATGGTGTTGTCTTN

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTGCAAGATTTTTTTTCC
TAGACTTTTCTCTCTTCCTCCTGGGCTTGGGCACCAGATGAATGGAAGGA
AAAAGAGAAAGAAAAAGAGGACATGACTGCTCCGAAGGGGTTGAGGTTTT
TATTACAGATAAAAGGAGAGCACAGGCAGAGGCATCTGGAAGAGTCCAGA
CTGAACATGCCCAGCAGGCTGAACTGGGATGTGTGCGGAGAGGAGGAAGG
GGGATGGAGAGAGGATGAGCAAGAATAGCATGTGTGTAGTAAGAGAACGT
CAATTTTTTTATTTTTTATTTTGTTTTGGTTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTATGTATGTATGTANNNNNTTTNNTTNNTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTT
TTTTTTTNNTNTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTGTNT
TGTTTTTTTGTTTTATATNNTTTTTTGTATTGTGGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_d15.b1 MSMg01no530_d15.b1 CHROMAT_FILE:
MSMg01no530_d15.b1 PHD_FILE: MSMg01no530_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:28 2005
         (715 letters)



>mm_chr8_107966895_107968009
          Length = 1115

 Score = 1359 bits (703), Expect = 0.0
 Identities = 709/711 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtattctctctgaaataggttctgattagatattattctctttttacaaatga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtattctctatgaaataggttctgattagatattattctctttttacaaatga 264

                                                                       
Query: 65  ggcaatcaaggtagaaagagccagtcttgaaaggacaaatcagggtggtctgattagagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcaatcaaggtagaaagagccagtcttgaaaggacaaatcagggtggtctgattagagc 324

                                                                       
Query: 125 ccaggagatgtgtataaaaccagagtctattctcagcatctcctgtggaaggggattgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaggagatgtgtataaaaccagagtctattctcagcatctcctgtggaaggggattgtt 384

                                                                       
Query: 185 gaattgatgttaggcttcaccgtttactcaatgggaagtgtgcaaaatacgtttcgactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaattgatgttaggcttcaccgtttactcaatgggaagtgtgcaaaatacgtttcgactt 444

                                                                       
Query: 245 ctgagtgtctacagaacacttcaaaacttacgagaccattttgtacccatggtcttgttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgagtgtctacagaacacttcaaaacttacgagaccattttgtacccatggtcttgttt 504

                                                                       
Query: 305 ttgcctccctttgctgctgaaagacgggtagtataagtctcatcagcattgctgaactaa 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ttgcctccctttgctgctgaaagacgggtagtatacgtctcatcagcattgctgaactaa 564

                                                                       
Query: 365 caaagtgagggaattcagagagctgatgaagcaacctgcccaggttctcatagtttctaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaagtgagggaattcagagagctgatgaagcaacctgcccaggttctcatagtttctaa 624

                                                                       
Query: 425 gcggtgacgccatgagttaaccccaggtcttgtgataccttagtatcttttttataagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcggtgacgccatgagttaaccccaggtcttgtgataccttagtatcttttttataagac 684

                                                                       
Query: 485 atgctacctttgaactatgttgggacttcactgtattcctttccttttaatatagacgca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgctacctttgaactatgttgggacttcactgtattcctttccttttaatatagacgca 744

                                                                       
Query: 545 aacaaaggactttttattcccttccccaaccgggaaataaaggattccctaaccagcatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacaaaggactttttattcccttccccaaccgggaaataaaggattccctaaccagcatt 804

                                                                       
Query: 605 tgtgcagcccagggcagtggcacaccagctcagaaattagacgtttttccgctggggaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgcagcccagggcagtggcacaccagctcagaaattagacgtttttccgctggggaca 864

                                                              
Query: 665 caggtaatccactcactctcctgccgaatgaccaatactaataatatggtg 715
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 caggtaatccactcactctcctgccgaatgaccaatactaataatatggtg 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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