BAC Information

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BAC

Clone NameMSMg01-530J11
Chromosome8 (Build37)
Map Location 12,951,273 - 13,127,898
singlet/doubletdoublet
Overlap geneMcf2l, F7, F10, Proz, Pcid2, Cul4a
Upstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229
Downstream geneLamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530J11.T7 (MSMg01no530_j11.b1)MSMg01-530J11.TJ (MSMg01no530_j11.g1)
ACCAG599192AG599193
length748752
length of high quality
(start - end)		685 (54 - 738)627 (80 - 706)
definitionCHROMAT_FILE: MSMg01no530_j11.b1 PHD_FILE: MSMg01no530_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:58 2005CHROMAT_FILE: MSMg01no530_j11.g1 PHD_FILE: MSMg01no530_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,127,228 - 13,127,898)(12,951,273 - 12,951,899)
sequence
NTTATAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTTGATGTCAAATAGTTTGTCCTATACAATTAACCA
TTTGTGAAGTTATATATAATGCTCACAGGGTTTCACAAGTTAAAGGTTAA
AACTCACTGTAAAATCACCCATGATTGGGAAAACCTACCTTTCTGCAGAA
TTGCTGTCAAATGTTCTCCTAACAGCTGTTTCTCCACACAGGCAATCAAC
GGTTTTCTGTAAAAGCAAACCAGATGATGTCAGTACAGAGGCTGGTTAGC
TGTTGAGGTGAGAGTTGAAGTCACAGCATGCATCTAACAGCCACTTGGAC
CGAGGGCTAAAACCTAAGATTTTATTACACTGATTATTAATTATGGCTTT
TGCTGATGATTCTAACCCAGATTTCAATTCAATTTACTCTTTTCATTAGA
CAAGATCTTAATACACAGGCCACGCTGGTCTGTCTCCACTCCCTAGTGCT
GGGATTATAACATCTGCCTGGCTCTTGCAGCAGCATTTCTAAACACAAGC
TGCTGAATAACACAGCAGGTCCACAGGAAATGGTCTGCCTGCCTGGCTGG
TGTAGGTACATGGGTACGGCACCCTGGGTTTTGACTTTTTCCTCTGCCCG
GCACAGTTTGGCCCCGGATGTCACTTGCTAAAGCCTCCTGAATCACACAT
GTAAACTCTAGGGCAGTCTGGAGTCTTGTGGCGGGAGCCCAGGGATGN

NNTTTACAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCCTTCTTTTGTATGAGG
AGGCTAAAAAGGAAGAGCAGACTGCCCGGGGCCATAGCTCAGCTGTGCAG
GTACCTAGAATGTATCCCTCCCTCCTATAGGCTGGCTCAGTGTCCACTGC
TCTGTGTCTGGGCCTTCTGAGTCAACAGTTCATAGTGGTGATGAAACCAG
GGTCCCAAGGTCAGACACTGAGCATCAGCAGCAGACGCCTAGACTCCGTG
TTTGTGGCTGTCCCTTTCTAGACCACCACAGAGGATTTGTGCAGAGGTGG
GAAGTCGTGGCCACTGATGGGAAGACAGAGTAGCATGAGCCTCACAGAAA
ACACACTAACTAGACCTACTATGTGATCCAGCTGTGTCTGCCACCCACAG
GCCCTCACCTGCATTCCCTGCTCACTGAGATGCCACAGCAGCCAAGGAAG
TCAGCCTTGGTGTCATCAGTGACAGTCAGAGGCATAGTTCATAGATGCAG
GGATACAACTTAGCCATAAAAGATATCCTGCCATTTCAGCAGCCTGGAAG
GAATAGAGGGCCCTGTGAAACGTGAAGTATGCCAGGCAGAGAACTGAGTG
CTGTGTGCCCTCACTCCTTCTGTGTGGGCCCTGAAAGGCTGCATCTCTGG
AAAGGAGAGACAGGANGAGAGGGCAGAGTCCTCTGGTAACCCACCAGCAT
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_j11.b1 MSMg01no530_j11.b1 CHROMAT_FILE:
MSMg01no530_j11.b1 PHD_FILE: MSMg01no530_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:58 2005
         (685 letters)



>mm_chr8_13127013_13128098
          Length = 1086

 Score = 1236 bits (639), Expect = 0.0
 Identities = 663/671 (98%), Gaps = 1/671 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  atgtca-aatagtttgtcctatacaattaaccatttgtgaagttatatataatgctcaca 74
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 886 atgtcacaatagtttgtcctatacaattgaccatttgtgaagttatatataatgctcaca 827

                                                                       
Query: 75  gggtttcacaagttaaaggttaaaactcactgtaaaatcacccatgattgggaaaaccta 134
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 826 gggtttcacaagttaaaggttaaaactcactgtaaaatcactcatgattggggaaaccta 767

                                                                       
Query: 135 cctttctgcagaattgctgtcaaatgttctcctaacagctgtttctccacacaggcaatc 194
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cctttctgtagaattgctgtcaaatgttctcctaacagctgtttctccacacaggcaatc 707

                                                                       
Query: 195 aacggttttctgtaaaagcaaaccagatgatgtcagtacagaggctggttagctgttgag 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aacggttttctgtaaaagcaaaccagatgatgtcagtacagaggctggttagctgttgag 647

                                                                       
Query: 255 gtgagagttgaagtcacagcatgcatctaacagccacttggaccgagggctaaaacctaa 314
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtgagagttgaagacacagcaggcatctaacagccacttggaccgagggctaaaacctaa 587

                                                                       
Query: 315 gattttattacactgattattaattatggcttttgctgatgattctaacccagatttcaa 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gattttattacactgattattaattatggcttttgctgatgattctaacccagatttcaa 527

                                                                       
Query: 375 ttcaatttactcttttcattagacaagatcttaatacacaggccacgctggtctgtctcc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttcaatttactcttttcattagacaagatcttaatacacaggccacgctggtctgtctcc 467

                                                                       
Query: 435 actccctagtgctgggattataacatctgcctggctcttgcagcagcatttctaaacaca 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actccctagtgctgggattataacatctgcctggctcttgcagcagcatttctaaacaca 407

                                                                       
Query: 495 agctgctgaataacacagcaggtccacaggaaatggtctgcctgcctggctggtgtaggt 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agctgctgaataacacagcaggtccacaggaaatggtctgcctgcctggctggtgtaggt 347

                                                                       
Query: 555 acatgggtacggcaccctgggttttgactttttcctctgcccggcacagtttggccccgg 614
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 346 acatgggtacggcaccctgggttttgactttttcctctgcccgtcacagtttggccccgg 287

                                                                       
Query: 615 atgtcacttgctaaagcctcctgaatcacacatgtaaactctagggcagtctggagtctt 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atgtcacttgctaaagcctcctgaatcacacatgtaaactctagggcagtctggagtctt 227

                      
Query: 675 gtggcgggagc 685
           |||||||||||
Sbjct: 226 gtggcgggagc 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space:   726300
Effective search space used:   726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_j11.g1 MSMg01no530_j11.g1 CHROMAT_FILE:
MSMg01no530_j11.g1 PHD_FILE: MSMg01no530_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:58 2005
         (627 letters)



>mm_chr8_12951073_12952099
          Length = 1027

 Score = 1189 bits (615), Expect = 0.0
 Identities = 624/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatccttcttttgtatgaggaggctaaaaaggaagagcagactgcccggggccatagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatccttcttttgtatgaggaggctaaaaaggaagagcagactgcccggggccatagct 260

                                                                       
Query: 61  cagctgtgcaggtacctagaatgtatccctccctcctataggctggctcagtgtccactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctgtgcaggtacctagaatgtatccctccctcctataggctggctcagtgtccactg 320

                                                                       
Query: 121 ctctgtgtctgggccttctgagtcaacagttcatagtggtgatgaaaccagggtcccaag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctctgtgtctgggccttctgagtcaacagttcatagtggtgataaaaccagggtcccaag 380

                                                                       
Query: 181 gtcagacactgagcatcagcagcagacgcctagactccgtgtttgtggctgtccctttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagacactgagcatcagcagcagacgcctagactccgtgtttgtggctgtccctttct 440

                                                                       
Query: 241 agaccaccacagaggatttgtgcagaggtgggaagtcgtggccactgatgggaagacaga 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggccaccacagaggatttgtgcagaggtgggaagtcgtggccactgatgggaagacaga 500

                                                                       
Query: 301 gtagcatgagcctcacagaaaacacactaactagacctactatgtgatccagctgtgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagcatgagcctcacagaaaacacactaactagacctactatgtgatccagctgtgtct 560

                                                                       
Query: 361 gccacccacaggccctcacctgcattccctgctcactgagatgccacagcagccaaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccacccacaggccctcacctgcattccctgctcactgagatgccacagcagccaaggaa 620

                                                                       
Query: 421 gtcagccttggtgtcatcagtgacagtcagaggcatagttcatagatgcagggatacaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcagccttggtgtcatcagtgacagtcagaggcatagttcatagatgcagggatacaac 680

                                                                       
Query: 481 ttagccataaaagatatcctgccatttcagcagcctggaaggaatagagggccctgtgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagccataaaagatatcctgccatttcagcagcctggaaggaatagagggccctgtgaa 740

                                                                       
Query: 541 acgtgaagtatgccaggcagagaactgagtgctgtgtgccctcactccttctgtgtgggc 600
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acgtgaagtacgccaggcagagaactgagtgctgtgtgccctcactccttctgtgtgggc 800

                                      
Query: 601 cctgaaaggctgcatctctggaaagga 627
           |||||||||||||||||||||||||||
Sbjct: 801 cctgaaaggctgcatctctggaaagga 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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