Query= MSMg01no531_i17.b1 MSMg01no531_i17.b1 CHROMAT_FILE:
MSMg01no531_i17.b1 PHD_FILE: MSMg01no531_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:12 2005
(505 letters)
>mm_chr8_13885898_13886803
Length = 906
Score = 948 bits (490), Expect = 0.0
Identities = 499/502 (99%), Gaps = 2/502 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggaggaag-acacggggactggacaggctccgttctgttttcctttgtgcact 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattcaggaggaagaacacggggactggacaggctccgttctgttttcctttgtgcact 505
Query: 64 tgcatctaacaagcttcaaaaggaaaagtggggcatgggcttgaatagcggaagtacact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcatctaacaagcttcaaaaggaaaagtggggcatgggcttgaatagcggaagtacact 445
Query: 124 ctgccagaggccattgggttcactgtaaacgacctgaagatgtcccctttataagccgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgccagaggccattgggttcactgtaaacgacctgaagatgtcccctttataagccgat 385
Query: 184 accctctgtactgactgagtggccttgtttatgacaaaacatcttggaaaaaatgatcaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accctctgtactgactgagtggccttgtttatgacaaaacatcttggaaaaaatgatcaa 325
Query: 244 cttcatttctaaaatataaactaaatactccagtcagtaagtgctcacgtaatgaaagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcatttctaaaatataaactaaatactccagtcagtaagtgctcacgtaatgaaagaa 265
Query: 304 ctatctgtagattttttattgcttccttagaaaacggctattagaaagtttctttttttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctatctgtagattttttattgcttccttagaaaacggctattagaaagtttctttttttt 205
Query: 364 tttttttttttcccccgagacagggtttctctgtgtagccctggctgtcctggaactcac 423
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttttttttc-cccccgagacagggtttctctgtgtagccctggctgtcctggaactcac 146
Query: 424 tttgtagaccaggctagcctagaactcagaaatccgcaaagtgcgtctgcctcccgagtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tttgtagaccaggctagcctagaactcagaaatccgcaaagtgcgtctgcctcccgagtg 86
Query: 484 ctgggattaaaggcgtgtgcca 505
||||||||||||||||||||||
Sbjct: 85 ctgggattaaaggcgtgtgcca 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space: 443520
Effective search space used: 443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_i17.g1 MSMg01no531_i17.g1 CHROMAT_FILE:
MSMg01no531_i17.g1 PHD_FILE: MSMg01no531_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:12 2005
(653 letters)
>mm_chr8_13700456_13701509
Length = 1054
Score = 1149 bits (594), Expect = 0.0
Identities = 639/654 (97%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 1 acttcattcactgcacaaggaacagtaaaggagatagatggcttagcttgaggaaggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcattcactgcacaaggaacagtaaaggagatagatggcttagcttgaggaaggaga 260
Query: 61 caagggagactccacgccacaactgctgcctgactctgtcggggccacctatgtggaagg 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 caagggagactccacgccacaactgctgcctgactctgttggggccacctatgtggaagg 320
Query: 121 gcacctgtgtttttctgggtcagcaataaatagagttataaacacagcccatctatattg 180
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 321 gcacctgtgtttttctgggtcagcaatagatagagttataaacgcagcccatctatattg 380
Query: 181 tttccaagcctaagctgcccctaaattgaatgtgcttcttttgataggcacaccaatatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccaagcctaagctgcccctaaattgaatgtgcttcttttgataggcacaccaatatc 440
Query: 241 ttcaccatgatatggcaatttatttatcaagaatctgaatcaagaagatagacgcaggta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ttcaccatgatatggcaatttatttatcaagaatctgaatcaagaagatagacgcatgtg 500
Query: 301 gtaacaaggccccgcatccctcgattctgcgatttgggggatgggggtgcactttctttt 360
|||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 501 gtaacaaggccctgcatccctcgattctgcaatttggggggtgggggtgctctttctttt 560
Query: 361 aaatgtgcttctagctttgggcttattcagttctcccaatacccctaagatgtgtctgtc 420
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aattgtgcttctagctttgggcttattcagttctcccaacacccctaagatgtgtctgtc 620
Query: 421 tttccataaaggagacaatggcccaaaggtgagagatctccccaagagcatcaggttata 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tttccataaaggagacaatggcccaaaggtgagagatctccccaagagcatcaggttaga 680
Query: 481 gtagaggataggatgtagaattagacatctttgttgcacattcagacaagatacattgtt 540
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagagggtaagatgtagaattagacatctttgttgcacattcagacaagatacattgtt 740
Query: 541 gcctgacagtcaaaactgagctggtccccagaaatcttcttggctca-acatacaaagta 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 gcctgacagtcaaaactgagctggtccccagaaatcttcttggctcagacatacaaagta 800
Query: 600 gaatttatatgcatcctgagccccaatatgattcctaacagtccccggtactgt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaatttatatgcatcctgagccccaatatgattcctaacagtccccggtactgt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
