Query= MSMg01no531_l08.b1 MSMg01no531_l08.b1 CHROMAT_FILE:
MSMg01no531_l08.b1 PHD_FILE: MSMg01no531_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:25 2005
(276 letters)
>mm_chr8_62724459_62725134
Length = 676
Score = 513 bits (265), Expect = e-150
Identities = 271/273 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaagaccttgatcctgagaattgttactgaatacattccgagagcagctttcca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaattcaagaccttgatcctgagaattgttactgaatacattccgagagcagctttcca 323
Query: 64 ttttatttaaagcattgcctttcatcactctttcaatattctatttccccagcactaatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttttatttaaagcattgcctttcatcactctttcaatattctatttccccagcactaatc 263
Query: 124 ccatgtatgtttcaccttcaaaatgtatccaaagtcagggtttgccgataaaggaaggaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccatgtatgtttcaccttcaaaatgtatccaaagtcagggtttgccgataaaggaaggaa 203
Query: 184 agagctcatatcagagaaatttcagaggaagaggtagggaggtagagagagagagagaga 243
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 202 agagctcatatcagagaaatttcagaggaagaggtagggagggagggagagagagagaga 143
Query: 244 gagagagagagagagagagagagagagagagag 276
|||||||||||||||||||||||||||||||||
Sbjct: 142 gagagagagagagagagagagagagagagagag 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 47
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no531_l08.g1 MSMg01no531_l08.g1 CHROMAT_FILE:
MSMg01no531_l08.g1 PHD_FILE: MSMg01no531_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:25 2005
(629 letters)
>mm_chr8_62588733_62589761
Length = 1029
Score = 1197 bits (619), Expect = 0.0
Identities = 626/629 (99%), Gaps = 2/629 (0%)
Strand = Plus / Plus
Query: 1 ttagccttaaattttccttagaggtaagaggtattcactactttgataatgtgagtaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagccttaaattttccttagaggtaagaggtattcactactttgataatgtgagtaaac 260
Query: 61 atgaaagttcttaggatattcatactgtgcaacatgaaagcatacaaaagttatttttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaaagttcttaggatattcatactgtgcaacatgaaagcatacaaaagttatttttaa 320
Query: 121 aacattgtttatagtttaagatatcactgaccaaataaaggtagttaaataaaccatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacattgtttatagtttaagatatcactgaccaaataaaggtagttaaataaaccatgac 380
Query: 181 acatctctataatggactgccattcagtcttacaaagaatgactacatttttaagaattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatctctataatggactgccattcagtcttacaaagaatgactacatttttaagaattc 440
Query: 241 ataaagaatgatatttgagattaatagttaactggaaaaactaaatataacaaaagcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaagaatgatatttgagattaatagttaactggaaaaactaaatataacaaaagcttc 500
Query: 301 tatcatgtatcttgcttttgtgtaaggaaaactgtaaaaataataaaatatgtgtatgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcatgtatcttgcttttgtgtaaggaaaactgtaaaaataataaaatatgtgtatgtg 560
Query: 361 cttcacacaagcacaaaagtgtggagataaattaatggttattattttctctaatctttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcacacaagcacaaaagtgtggagataaattaatggttattattttctctaatctttc 620
Query: 421 atgagtcagacatataagttagttcatggaagattagagaaaataataaaaaccattagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgagtcagacatataagttagttcatggaagattagagaaaataataaaaaccattagg 680
Query: 481 attaataattattataaaaagtgattcagaaaaaaaatcatctaaggacattaaagttaa 540
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 attaataattattataaaaagtgattcagaaaaaa--tcatctaaggacattaaagttaa 738
Query: 541 tggttaaagctttaatgagtagcatgatatggtcatgcattcaaaatatttctctaagca 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 739 tggttaaagctttaatgagtagcatgatatggtcatgcattaaaaatatttctctaagca 798
Query: 601 atattgctagtcaccaaggggaaaatgta 629
|||||||||||||||||||||||||||||
Sbjct: 799 atattgctagtcaccaaggggaaaatgta 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
