BAC Information

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BAC

Clone NameMSMg01-531M11
Chromosome8 (Build37)
Map Location 109,642,972 - 109,643,324
singlet/doubletsinglet
Overlap genenone
Upstream geneNfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
Downstream geneCyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531M11.T7 (MSMg01no531_m11.b1)MSMg01-531M11.TJ (MSMg01no531_m11.g1)
ACCAG600096AG600097
length808770
length of high quality
(start - end)
356 (49 - 404)---
definitionCHROMAT_FILE: MSMg01no531_m11.b1 PHD_FILE: MSMg01no531_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:31 2005CHROMAT_FILE: MSMg01no531_m11.g1 PHD_FILE: MSMg01no531_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCATTTGAAACCCTCTTTGGTCTGCCAAGCATACACAAGC
CGACAGTCCATCTCTCTTCTAGAACCTGCTGCAAGCTCACCTCCCTTGGA
AGCCTTCTCTGGCGACCTTTCACCCTTTTGCTTTCTGTTCTGTGCTACAG
ATGCAAAGAGGTAGTGGAGATGTAACCTGGGAAGGACCCTTACGACTGTG
CTGTGTGGATGTTAATGCTGCTTCTTTCCGTTTGGGGCGGTATGGCTTTA
TGAAGCAAGCAGGGGCTCTGGAATCTGTCTGTCATGCACACTCGGAGATC
TTGACTTCATTCTCCTGTCCCCTGTCACCTTGGAAATAATTCTTCCTTCT
TGCCATTTCTTGCCTTCCACCTCGGCTTCTTCAAGAGTGGAAAAACAGGC
TTCTTTTACCCTTCCCTACATTTTATTATCCCAAACCCTCATCCCATTGT
GCTCTTGGCTTTCTCCTTTCGTCCTGGTCAGGATTATTTTTGTTTCCCTT
CTCTTCTGTATTTTCCCTATTCTTTTTCAAAACTATCACCCACGTTTTCC
CTTATTTGTTCCCCTGGCTATGGTCGCTCTTAATCCCCCCGTTTTTTCAC
CATATTTTTTTCCTCCATACATTTTCCTTGTCTTTGCCCCCTTTCCTTTT
GGACCTTCCTTTATTTTTATCCACCACCCTATCTATTTCTTTCATATACT
TTTTCACCCGTATTTCTTTTTTTCCCCCTTTTTTCCTTTCTCTTATTTTT
TTTTATTN
CCCATCTTTTGTGTTGCCTGGTTGGCGCCTGTTTCCCAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGAGATCTTCTTGCCTTTGCCTCCCT
AGTGAGGGATTAAAGGTATGTACCACCACTGCCCAGCTATATAATATTTT
TAATTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGAACATTAG
CACAGGTGCCCCCAGAAGAGGACATAGGATTCCCAGGAGTTGAAGTTACA
TATAGCTGTGATCCACCCAATTTGGGATAACCTGAACTGAACCGGATTTT
GGTTGTGACAACCAAAAATGTGTTCTGACATGGCCAAAGATACCCAGGAG
CATAAAATTGTTTTCACTGAGACCCATAATGATAGGCAGAAATTCACTAA
ATGATATTAAGTACGTTCAGAGGAGACAACAGCCTTCTCCCCTTGTTTTT
GAAACACAAGATATATTTGAAAACATTTACTGTGAACTTCACATGACCGC
TTTTTGTTGGACCCTGGGGATATCCCCCCTGTATTATTGATAACCTTTTC
CCTCCCATTCAATTCATTGTTGAACCGTCCAATCTTCGTTCTATTAATCT
TAATAAACCTTTTTCAGGTTTTTTATTCTCCAGGTTAATTTATTCACAAG
GTAGGGTTCCCTTTTTATAAACACAATGTTTGTTCGCATATAATTTTACT
GTTTCTCTTTTCTTCCCTTCTTTTTTTTCCTCCTTTTCTCCCGTTCTTCT
TCTTCTTTTCACTTCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_m11.b1 MSMg01no531_m11.b1 CHROMAT_FILE:
MSMg01no531_m11.b1 PHD_FILE: MSMg01no531_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:31 2005
         (356 letters)



>mm_chr8_109642768_109643524
          Length = 757

 Score =  652 bits (337), Expect = 0.0
 Identities = 349/353 (98%), Gaps = 1/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcatttgaaaccctctttggtctgccaagcatacacaagccgacagtccatc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcatctgaaaccctctttggtctgccaagcatacacaagccgacagtccatc 264

                                                                       
Query: 65  tctcttctagaacctgctgcaagctcacctcccttggaagccttctctggcgacctttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcttctagaacctgctgcaagctcacctcccttggaagccttctctggcgacctttca 324

                                                                       
Query: 125 cccttttgctttctgttctgtgctacagatgcaaagaggtagtggagatgtaacctggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccttttgctttctgttctgtgctacagatgcaaagaggtagtggagatgtaacctggga 384

                                                                       
Query: 185 aggacccttacgactgtgctgtgtggatgttaatgctgcttctttccgtttggggcggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 aggacccttacgactgtgctgtgtggatgttaatgctgcttctttccgtttggggcggtt 444

                                                                       
Query: 245 tggctttatgaagcaagcaggggctctggaatctgtctgtcatgcacactcgg-agatct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 tggctttatgaagcaagcaggggctctggaatctgtctgtcatgcacactcgggagatct 504

                                                                
Query: 304 tgacttcattctcctgtcccctgtcaccttggaaataattcttccttcttgcc 356
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgacttcattcccctgtcccctgtcaccttggaaataattcttccttcttgcc 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 757
Length adjustment: 9
Effective length of query: 347
Effective length of database: 748
Effective search space:   259556
Effective search space used:   259556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)