BAC Information

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BAC

Clone NameMSMg01-532C09
Chromosome8 (Build37)
Map Location 58,107,522 - 58,107,730
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532C09.T7 (MSMg01no532_c09.b1)MSMg01-532C09.TJ (MSMg01no532_c09.g1)
ACCAG600377AG600378
length745741
length of high quality
(start - end)		605 (53 - 657)531 (82 - 612)
definitionCHROMAT_FILE: MSMg01no532_c09.b1 PHD_FILE: MSMg01no532_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:00 2005CHROMAT_FILE: MSMg01no532_c09.g1 PHD_FILE: MSMg01no532_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTCTATGTTCACTCACAATTGTTCACAGCACAATTTGT
GGAAGATTTGTTTTTATTTTCCAGTGTGGATTTCTTGTTTCATTATCAAA
ATCAGGTGTCCATACATTTGTGGGTTTATAGCCAGGTCTTCAATTCAACT
CCATTTGTCAACAGGTCTGTCTTTGTGCTAGTACAATGCAAAATCAGGGA
TAGTGGTATCAATTATTTTATTATTTTATTATTAAGGAGTGTTGTAGCTA
TCTTAGTTTGTGTGTGCACTTGTGTGTGTGTGTGTGTGTGTGTGTATTTG
CATGTGTGTGTGTTTCCATGTGTATTGAAATTGATTTTTCAAGACCTGCA
AATAATTGTGTTAGAATTCTGATGGGGATTGCATGGAATCTATACATTTA
GATGGGGAGAGAAGAGTGTAGGAGTCAAAGAACATGAAAGCTGCTGCAAT
ATTGTATTCTTTAGACATAGCAGGGAGCTTCACGAACTGTATCTCAGTAA
TAGAGGTCCATTAGACTGGGTGCTGTTTCTGATGCTTTTTGCTGCTTTTG
TCCTTCTACTGGGTTGTCCATGCTTAATATGAGGGGAGGTACCTAGACTT
ATTGCTATTTGATATGCCATATTTTTTGATATCCCTGGAAGACTTTGCCC
TCTCTGAAGAAAAATGGAGGACGCGTGGAAGGGGTAAGAATGGGA

NNNGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGAGAATGCCAAGATT
AGCTGCTGGGAAGTCTGCCCGGAGCCCTAAACCCAGGGTGTACCATGTGG
CAGTCCCTGGAGGGAAGCGCCTGTGTGTCCAGTCAATCCAAGTCTCAGGA
GTTGCAGGTTTTCTGGTGGTGGAAATCATCTGGGGTTCACCTTTCATAGA
AGCACTTTCTGTAGTCCTTCAGGGCCTTGGCCATGAGAGGAGCAGGTCTT
TTAGCAGGGCCCTTTTTGGTGCCTCTTTCTCCAAGGAGAAGGCAGGAAGC
CCTCTGGACTGGAGGATGGGCAGGAGCCTCAGGAAGACTGTGCGGATTTT
GGGCAGAGGCAGCCACAGTGGGTCCTGGCTGTCCTTGTTGGCTGGGGCTC
TTGAGCTCGGTGATGAAGGAGACCATCATCGTCTGTCTGGGTTGAGGCTT
CTTGGCTCTTGTGCTTTTGAGACGGCCTATGACGGTTTGCAGCCTCTCGT
CTTGGGACCCCTGAAGATGCAGGACTCTGGGGGCCTCAGGCTGGCTGTAG
GATTCCTTGCCTGCGGTCCTGGGGCCAGGACTTCTCTTCTGGCTGCCCAG
CCCAACTTTGTCCTTGCCAGCCTGGCAGTGAGCACCATCTCTGGTTCCAG
TGCTCTTCTGCTGGGGTCTTGCTGCAGGCCTGCAACCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_c09.b1 MSMg01no532_c09.b1 CHROMAT_FILE:
MSMg01no532_c09.b1 PHD_FILE: MSMg01no532_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:00 2005
         (605 letters)



>mm_chr8_58106925_58107930
          Length = 1006

 Score =  253 bits (131), Expect = 2e-71
 Identities = 191/211 (90%), Gaps = 5/211 (2%)
 Strand = Plus / Plus

                                                                       
Query: 398 agatggggagagaagagtgtaggagtcaaagaacatgaaagctgctgcaatattgtattc 457
           |||||||||||||||||| |||||| |||||||||||||||||||||  | |||||||||
Sbjct: 598 agatggggagagaagagtataggagccaaagaacatgaaagctgctgtgagattgtattc 657

                                                                       
Query: 458 tttagacatagcagggagcttcacgaactgtatctcagtaatagaggtccattagactgg 517
           |||||||||| || |||||||||| || |||||||||||||||||| ||| |||||||||
Sbjct: 658 tttagacataacaaggagcttcaccaattgtatctcagtaatagagctcctttagactgg 717

                                                                       
Query: 518 gtgctgtttctgatgctttttg-ctgcttttgtccttctactgggttgtccatgc-ttaa 575
           ||||| |||||||||| ||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 718 gtgctatttctgatgc-ttttgcctgcttttgtccttctactgggttgtcca-gccttaa 775

                                          
Query: 576 ta-tgaggggaggtacctagacttattgcta 605
           || ||||| |||||||||||  |||||||||
Sbjct: 776 taatgaggagaggtacctagttttattgcta 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space:   592620
Effective search space used:   592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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