Query= MSMg01no532_m03.b1 MSMg01no532_m03.b1 CHROMAT_FILE:
MSMg01no532_m03.b1 PHD_FILE: MSMg01no532_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:46 2005
(520 letters)
>mm_chr8_120878623_120879542
Length = 920
Score = 857 bits (443), Expect = 0.0
Identities = 509/551 (92%), Gaps = 31/551 (5%)
Strand = Plus / Plus
Query: 1 ctgattagtggaggcacacagttgcctccagtgctccatgtgcaaatgtgctacaccgca 60
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 201 ctgattagtggaggcacacagttgcctccagtgctccgtgtgtaaatgtgctacaccgca 260
Query: 61 cggttccggaaattagcacgacttcctaccgtccccatcagaatccatcctcaacgacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggttccggaaattagcacgacttcctaccgtccccatcagaatccatcctcaacgacat 320
Query: 121 tttgattgcaaggggccaagctaatttcagcaatgggggttttgctgggctgggggaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgattgcaaggggccaagctaatttcagcaatgggggttttgctgggctgggggaatc 380
Query: 181 cctaaacttgtttttaaatttgataaagttttcctttaacttgttctcctcgcccccttt 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagacttgtttttaaatttgataaagttttcctttaacttgttctcctcgcccccttt 440
Query: 241 gggggagtgagggtggacacgctttgccgcacaggtctgctttctcctcgcagctatcgt 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 441 gggggagtgagggtggacacgctttgccgcacagatctgctttctcctcgcaggtatcgt 500
Query: 301 atttagacttcgccctcaggtttttcagatttttaaaaaaggttgaaacgaaatggaccg 360
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 atttagacttagccctcaggtttttcacatttttaaaaaaggttgaaacgaaatggaccg 560
Query: 361 cggtccaagctcactcccaggcttttggatagccagcgctattttctggagacagctggg 420
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 561 cggtccaagctcactcccaggcttttggatggccagcactattttctggagacagctggg 620
Query: 421 tatgactgcatttccttttgt-------------------------------ctctcctt 449
| ||||||||||||||||||| ||||||||
Sbjct: 621 tttgactgcatttccttttgtttctgatcctgcacgggagaggatgctaagtctctcctt 680
Query: 450 ctgctgtgaatcctggctgtgtaaggatcatgtggctgcgtttccacaggtgtcactatc 509
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 ctgctgtgaatcctggctgtgtaaggatcatgtggctgggtttccacaggtgtcactatc 740
Query: 510 gttcaccagat 520
|||||||||||
Sbjct: 741 gttcaccagat 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_m03.g1 MSMg01no532_m03.g1 CHROMAT_FILE:
MSMg01no532_m03.g1 PHD_FILE: MSMg01no532_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:46 2005
(574 letters)
>mm_chr8_121062451_121063422
Length = 972
Score = 1044 bits (540), Expect = 0.0
Identities = 563/574 (98%), Gaps = 7/574 (1%)
Strand = Plus / Minus
Query: 1 ttgcctcgggttttctgtctgtcccgaggcgtcacgggtgtccactgtgatcctgaggac 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 ttgcctggggttttctgtctgtcccgaggcgtcacgggtgtccactgtgatcctgaggac 903
Query: 61 ttcaagagagaaggttcccatcacctccaagtctcagttaaaaaaaaaaaaaatcagagc 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 902 ttcaagagagaaggttcccatcacctccaagtctcagtt--aaaaaaaaaaaatcagagc 845
Query: 121 acagagaggctaagtagcttgcccagagccacaagctcacaaggggagagctgagatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 acagagaggctaagtagcttgcccagagccacaagctcacaaggggagagctgagatttg 785
Query: 181 tagggaagcaacggggggggggggggagaaccacattatttcagtgttagcctcacagtc 240
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 784 tagggaagcaatgggggggggggg-----accacattatttcagtgttagcctcacagtc 730
Query: 241 agtcttagccacctgagccaacagctgcctgaaagggatcaaaattgcactgagcagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agtcttagccacctgagccaacagctgcctgaaagggatcaaaattgcactgagcagcag 670
Query: 301 cgagcccccaaagccacactgtgcatcatctgaacttatagagagaggcagggaccaagt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 669 cgagcccccaaagccacactgtgcatcatctgaacttatagggagaggcagggaccaagt 610
Query: 361 aactcccaaggcacagtgtgcagctttgagatgcacgtgtgcctgtctgtagacacacac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aactcccaaggcacagtgtgcagctttgagatgcacgtgtgcctgtctgtagacacacat 550
Query: 421 acccatgcttacagatgtacacactcactggcctggtgatttttagtgtcgcatcctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acccatgcttacagatgtacacactcactggcctggtgatttttagtgtcgcatcctcag 490
Query: 481 gttcctcaccatgctgcttagtcatagatgagcccaaagaatggcttgtatgactcacgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gttcctcaccatgctgcttagtcatagatgagcccaaagaatggcttgtatgactcacgg 430
Query: 541 tattccctggttctacttaaaagaaccccacccc 574
||||||||||||||||||||||||||||||||||
Sbjct: 429 tattccctggttctacttaaaagaaccccacccc 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 972
Length adjustment: 10
Effective length of query: 564
Effective length of database: 962
Effective search space: 542568
Effective search space used: 542568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
