Query= MSMg01no532_n18.b1 MSMg01no532_n18.b1 CHROMAT_FILE:
MSMg01no532_n18.b1 PHD_FILE: MSMg01no532_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:54 2005
(637 letters)
>mm_chr8_19975980_19977016
Length = 1037
Score = 787 bits (407), Expect = 0.0
Identities = 581/647 (89%), Gaps = 20/647 (3%)
Strand = Plus / Plus
Query: 4 ggaattctcagctgtatcagaatccagatgttctaagatggtttggggggg-tgccaaaa 62
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 198 ggaattctcagctgtaaaagaatccagatgttctaagatgatttgggggggatgccaaaa 257
Query: 63 ggatgccagatttttacaaagacctgccaagtcttgaagtgtgctccttaggaaccgctc 122
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 258 ggatgccagatttttacaaagacctgccaagtcttgatgtgtgctccttaggaaccattc 317
Query: 123 tggaagagatgctgggaagtgccaccacccccccccgccactc--------ccccc-ccc 173
||||||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct: 318 tggaagagatgctgggaagtg----ca--cccccccgccactccccctccaccccctccc 371
Query: 174 cc--gcaagatattcgtgagaaagtgaggaagacca-agttgggtggacagaggagctga 230
|| |||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 372 ccaagcaagatattcgtgagaaagggaggaaga-cagagttgggtggacagaggagctga 430
Query: 231 gcctcaatgtagtagccactgaggtctcagccagtcccacaggagctggggaggctccaa 290
|||||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct: 431 gcctcaatgttgtagccactgaggtctaagccagttctacaggagctggggaggctccaa 490
Query: 291 actgggaggaggaagtccttagtaccacctgtgttagctttactcactacaggctctcat 350
|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 491 actgtgaggagggggtccttagtaccacctgtgtcagctttactcactacaggctctcat 550
Query: 351 ctaagacagtggttggagttttaacacaactcctcctgttgtgatgactctcaaccataa 410
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 551 ctaagacagtggttggagttttaacacagctcctcctgttgtgaggactctcaaccataa 610
Query: 411 aattaccgtgttgcggttctcgagacagctgtccctctttctaagccagcactccgtaag 470
||||| | ||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 611 aattatcttgttgcggttctctcgacagctgtccctctttataagttggcactccgtaag 670
Query: 471 gacgaagccatgttcatcttgagtgccaagattgtgaagccaaattttgagaagctggac 530
|| ||||||||||||| || |||| ||||| ||||||||||||| ||||||| |||
Sbjct: 671 gatgaagccatgttcagctccagtgacaagactgtgaagccaaatggggagaagccggat 730
Query: 531 gagttctgagtctggcatctctcaggtgctgctcgagctggagatgaacgcggatctcaa 590
|||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct: 731 gagttccaagtctggcatctctcaggtgctgcttgagctggagatgaacgcagatgtcaa 790
Query: 591 ggcacagctgtaagaactcaacatcaccacaaccaaggaaattgaag 637
||| | |||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 791 ggctctgctgcaggaagtcaacatcaccacaaccaaggaaattgaag 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_n18.g1 MSMg01no532_n18.g1 CHROMAT_FILE:
MSMg01no532_n18.g1 PHD_FILE: MSMg01no532_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:54 2005
(630 letters)
>mm_chr8_106754044_106755073
Length = 1030
Score = 1127 bits (583), Expect = 0.0
Identities = 613/633 (96%), Gaps = 17/633 (2%)
Strand = Plus / Minus
Query: 1 ctttaagcttcatgttgatactgtagggctgaggacaagaaaggggactggggcctgagg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctttaagcttcatgatgatactgtagggctgaggacaagaaaggggactggggcctgagg 618
Query: 61 gtcgggaatcctgttggtcccacagactgagcaggcttggtgaggctcctgcacgctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtcgggaatcctgttggtcccacagactgagcaggcttggtgaggctcctgcacgctcca 558
Query: 121 ccccaggcctgtgttgcccttgtctgctcccacaccaggagcacagcactcagttgcttg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 557 ccccaggcctgtgttgcccttgtctgctcccacaccaggagcacagcactcagtcgcttg 498
Query: 181 tggttttacttctcagtttatctgcgaaccactcccgaaatctgctaccagagattaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggttttacttctcagtttatctgcgaaccactcccgaaatctgctaccagagattaaag 438
Query: 241 atgaggtgccgggaagaggagaaagtcattccgatggtaagagaccagagccacctccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgaggtgccgggaagaggagaaagtcattccgatggtaagagaccagagccacctccac 378
Query: 301 ctcatcctgccagccctctcctctcctccaccatgacactatcacgcttatctggagcaa 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctcatcctgccagccctctcctttcctccaccatgacactatcacgcttatctggagcaa 318
Query: 361 aacccaggaagtacgactgaggcagctcaggcttcctctatggctttggagcccttgtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacccaggaagtacgactgaggcagctcaggcttcctctatggctttggagcccttgtgg 258
Query: 421 gtcccagggccactttacttcctatgtttcctgactcaggcctctgcacctccatgtaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtcccagggccactttacttcctatgtttcctgactcaggcctctgcacctccatgtaca 198
Query: 481 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 540
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cacacacacacacacacacacacacacacacacacacacacacacacac----------- 149
Query: 541 cacgtacaggcacaccccccccccc---acacccactgtgtatatactcatttgttctgt 597
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 148 ---gtacaggcacaccccccccccccacacacccactgtgtatatactcatttgttctgt 92
Query: 598 acagtagcttgtcttcacacacgcacatgcatg 630
|||||||||||||||||||||||||||||||||
Sbjct: 91 acagtagcttgtcttcacacacgcacatgcatg 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
