BAC Information

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BAC

Clone NameMSMg01-532N24
Chromosome8 (Build37)
Map Location 42,210,273 - 42,210,690
singlet/doubletsinglet
Overlap geneMtus1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl
Downstream geneFgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532N24.T7 (MSMg01no532_n24.b1)MSMg01-532N24.TJ (MSMg01no532_n24.g1)
ACCAG600930AG600931
length743746
length of high quality
(start - end)		600 (53 - 652)639 (82 - 720)
definitionCHROMAT_FILE: MSMg01no532_n24.b1 PHD_FILE: MSMg01no532_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:55 2005CHROMAT_FILE: MSMg01no532_n24.g1 PHD_FILE: MSMg01no532_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTCCCTCCTACCACACTTAAGATTTGTGTGTAGTTTT
TTCATTCCTATGGAACACTCTGTAGCTCATTAGAGTCTCTCATTATTGAA
CTTGATTTAAAACTTTTTTTTGTTTTGTTGTTGTTGTTTTTTTGTTTTGT
TCTGTTTTGTTTTTTCGAGGCAGGGTTTCTCTGTGTAGCCCTGGCTATCC
TGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTG
CCTCTGCCTCGAAAAAAATAATTCCAACTACACATATAAATGGCTTGGTT
CTACATGTGGACTCTATAAACTGAGCATCTAATGAAAGCAAATTCAGTGC
TGGGATTAAAAGGCATGTGCCACCACCACCCGGCATGAAGTAGCTTCTTA
GCCACTCTTTAGTGGCAAGTGCGGCTTCTCTTTCTGTTCTTTATGAATTA
GCAATAATGAAATAAGTTATTTCCGCTGTTAGTTAGGTTTTGCTATCTCA
ACAGCAGCTATAAAACCTTGGAGAGACCTATTTTGTTATAGAGTTGGTAA
AAAAAAAAATGTTATGGGAACCAGAACACCTGGAACGGGCATGGCATGTG
TAATGGGAACCAAACACTGACTGGTCAGATAAAGCTGGATGCATAGCTCT
CATCCTCTGTGTTAGTAGGGGATTTTTGTAAGTTATCTGAAGA

NTTTGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTAATCGAGGATATGG
AGTCTGAACTGGCCATCTTATATAGCCAGGCGAAGCTTTCAGTGGTGAGA
TACTAGGACGGAGACTCACTGAAAACTAACAGTGGGTCTCCATTTTGAAG
AGCAACTTCAACTTAGCTCATTGTATATAGAGGTAGAGCTGGTACCTGCA
TGGAGCCTTCACCCCAACATCCTAGTCTCTCTGGTACAGAAAGGTACTCT
GCAGACAATGAAAAGGGAAATTTGGACACCAAATGAGCCCCCAAACCCTT
GACCTATAATCTGTCTAGAATGTGTTAAAGCAATGGTGGAGCCGAACTAG
TGGCAGTGGCCAAACTATGACTGGTTTAACTTGTGACCCATGCATGCAGG
ACGAGAAACTAGAGACCTAGGTAGAATCAAACACAACTGGGCAAAAATAA
AATAAAGTAAAATAAAAAAGTAAAATCAATGAAATGATTCCCAGTGATTT
TCTGCTATACTCATAGATCAGTGCTTTGTCCAGTCATCATCAAAGAGGCT
TCCTCTGGCCTCATGGGAACAGGTACATAGACCCAACCCAGACACTAGGC
AGAGACAGTCTACATTGGAGGTCTCTATAAGGTCTCTACCCCTTCCTTGG
ACCTCATGGAATCCTGAAGAAGAAGGGAAAGAAACATTGCANGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_n24.b1 MSMg01no532_n24.b1 CHROMAT_FILE:
MSMg01no532_n24.b1 PHD_FILE: MSMg01no532_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:55 2005
         (600 letters)



>mm_chr8_42209691_42210690
          Length = 1000

 Score =  808 bits (418), Expect = 0.0
 Identities = 418/418 (100%)
 Strand = Plus / Minus

                                                                        
Query: 183  gtagccctggctatcctggaactcactttgtagaccaggctggccttgaactcagaaatc 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gtagccctggctatcctggaactcactttgtagaccaggctggccttgaactcagaaatc 941

                                                                        
Query: 243  tgcctgcctctgcctcgaaaaaaataattccaactacacatataaatggcttggttctac 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  tgcctgcctctgcctcgaaaaaaataattccaactacacatataaatggcttggttctac 881

                                                                        
Query: 303  atgtggactctataaactgagcatctaatgaaagcaaattcagtgctgggattaaaaggc 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  atgtggactctataaactgagcatctaatgaaagcaaattcagtgctgggattaaaaggc 821

                                                                        
Query: 363  atgtgccaccaccacccggcatgaagtagcttcttagccactctttagtggcaagtgcgg 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  atgtgccaccaccacccggcatgaagtagcttcttagccactctttagtggcaagtgcgg 761

                                                                        
Query: 423  cttctctttctgttctttatgaattagcaataatgaaataagttatttccgctgttagtt 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  cttctctttctgttctttatgaattagcaataatgaaataagttatttccgctgttagtt 701

                                                                        
Query: 483  aggttttgctatctcaacagcagctataaaaccttggagagacctattttgttatagagt 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  aggttttgctatctcaacagcagctataaaaccttggagagacctattttgttatagagt 641

                                                                      
Query: 543  tggtaaaaaaaaaaatgttatgggaaccagaacacctggaacgggcatggcatgtgta 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  tggtaaaaaaaaaaatgttatgggaaccagaacacctggaacgggcatggcatgtgta 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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