BAC Information

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BAC

Clone NameMSMg01-533G18
Chromosome8 (Build37)
Map Location 64,611,240 - 64,611,586
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10
Downstream geneLOC100040775, LOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533G18.T7 (MSMg01no533_g18.b1)MSMg01-533G18.TJ (MSMg01no533_g18.g1)
ACCAG601348AG601349
length742764
length of high quality
(start - end)		440 (48 - 487)688 (75 - 762)
definitionCHROMAT_FILE: MSMg01no533_g18.b1 PHD_FILE: MSMg01no533_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:37 2005CHROMAT_FILE: MSMg01no533_g18.g1 PHD_FILE: MSMg01no533_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGNNTTCTATATTTGGGCCGCTATACGACTCCTATATTTCGAGGATCC
GCGGAATTCTAACTGTGTCCATGCGTGAATTTAAAAGAAATAATCTTGAA
TTGGATTGGAAGGGATGAATAATGAGAGCGTGGGAAGGCAAGTTGAAGGT
GGTGAATGTTTTCACATTACAATGCAGGAGATTCTGAAAGATCCCAGGAA
GAGACCCTGTCTCACAAGCTAAGGCACAAAGCACCTGAGAAATGGCACCT
GAAATTTACCTCAAGCTTCCATATACATGTTATATATATGGCATTGATAC
ACAGAAATAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAAGAAGGAAGGAGATGGAAAAGAAGGAAAGAA
GGAGATGTAAAGGAAGAAAGAGAAAGGAAGAAAGAAGGAGAGATGGAGGG
AGGAAAGAAAGGGAGAGAGNAGGTAGGGAGGGGAGGGATNTNNNNNNTTN
NTTNNTNTTNTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TNTTTTTTTNNTTTTNTTTTTTNNNNNNTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTNNNNNTTTTTTTTTTTTTTTNTTTTTTTTNTTNTTTTTTT
TTTTTTTTTTTTTNTNTTNNNNNNTTTTTTTTNTNTTTTTTTTTTTTTTT
TTTTTNNNNTNNNTTTTTTNTTTTTTTNNNNTTNTNTTTTNT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGATGATCCATGTGAGACCATCCC
CTGTGGTGCTTAGCCTTGCAACCCATGCTGATGCCCATACTGGATTCATA
TTATCAAAAACCAGTATGCACAGGTCTGAATCGTATGCAGCTCCTGAAGG
AGAATTATCAACCTCAGGTTCAGCAAGGCCTCTGTCAGCCAAATCAAGTC
TATAATTATGAATTTGCAAAGGTCTTGATGTCATGGAATCAATCTGCTGT
TTTATAAAACCAGAAATTTGTTTTAAAAAAATAAAAGGCCCCAAAGTTAT
TAATAATAAAATGCTTTTTAAAGGTCCAAGGAGGGGCATCAAGAGGGTGA
ACATAGAGGACTTCCAGCAATTAGCAGCAGCAGCTGAAAACTGTGTTCTC
TGGAGCTCCAAATTAAGTGTATGTAACTGTTGTATTCGAGTTCCCACTCA
TTCAGAGAGAAACTTATTCCTCTTTCAGAAAGAGACAGGCGCCACCTTTC
TCAGTGGTCAGCAAATCAAGTGCTAGTCAATTCTCTAAGGCAACTTGGGT
GAGGGAAGTTAATTGTCTCTGTAAAGAAGCTAATGATTCAATGGAGGCTT
CCACCGCCAATGGGTTAAAGTTCCTCCAGCCAAACAGGCAGCCAGAGGTT
ACCAAGGAGGCGCTGGCCACTACAGGGAGGAAAACAGCTTGCTTTATCCT
AATATCCGGGGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_g18.b1 MSMg01no533_g18.b1 CHROMAT_FILE:
MSMg01no533_g18.b1 PHD_FILE: MSMg01no533_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:37 2005
         (440 letters)



>mm_chr8_64611240_64612080
          Length = 841

 Score =  540 bits (279), Expect = e-158
 Identities = 335/367 (91%), Gaps = 23/367 (6%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctaactgtgtccatgcgtgaatttaaaagaaa-taatcttgaattggattggaag 65
           |||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||
Sbjct: 347 gaattctaactgtgaccatgcgtgaatttacaagaaagtaatcttgaattgggttggaag 288

                                                                       
Query: 66  ggatgaataatgagagcgtgggaaggcaagttgaaggtggtgaatgttttcacattacaa 125
           |||||| |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 287 ggatgagtaatgaaagcgtgggaaggcaagttgaaggtggtgagtgtgttcacattacaa 228

                                                                       
Query: 126 tgcaggagattctgaaagatcccaggaagagaccctgtctcacaagctaaggcacaaagc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tgcaggagattctgaaagatcccaggaagagaccctgtctcacaagctaaggcacaaagc 168

                                                                       
Query: 186 acctgagaaatggcacctgaaatttacctcaagcttccatatacatgt--tatatatatg 243
            |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 167 gcctgagaaatggcacctgaaatttacctcaagcttccatatacatgttatatatatatg 108

                                                                       
Query: 244 gcattgatacacagaaataggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gcattgatacacagaaataggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag 48

                                                                       
Query: 304 gaaggaaggaaggaaggaaagaaggaaggagatggaaaagaaggaaagaaggagatgtaa 363
                               ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 47  --------------------gaaggaaggagatggaaaagaaggaaaaaaggagatgtaa 8

                  
Query: 364 aggaaga 370
           |||||||
Sbjct: 7   aggaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space:   358592
Effective search space used:   358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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