BAC Information

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BAC

Clone NameMSMg01-533I06
Chromosome8 (Build37)
Map Location 59,750,038 - 59,941,599
singlet/doubletdoublet
Overlap geneLOC100040515, Hand2, Scrg1
Upstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
Downstream geneSap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533I06.T7 (MSMg01no533_i06.b1)MSMg01-533I06.TJ (MSMg01no533_i06.g1)
ACCAG601419AG601420
length774741
length of high quality
(start - end)
272 (54 - 325)238 (85 - 322)
definitionCHROMAT_FILE: MSMg01no533_i06.b1 PHD_FILE: MSMg01no533_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:44 2005CHROMAT_FILE: MSMg01no533_i06.g1 PHD_FILE: MSMg01no533_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,941,338 - 59,941,599)(59,750,038 - 59,750,275)
sequence
CTTTTTTTTCTTCCCTCGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TTGAGGATCCGCGGAATTCACAGTTCTTATAGTGCAAATTAAACACAAAG
TTATGGAAATGTGGATCTGTGAGGGTGGTGTTTACAGATCTTAGAAAACT
GAGAAGATAGTAATTTGGGCTGGTAAGATGGCTCAGTGGGTAAGGACACT
TGCTGTCAAGTCGGGTGACCTGAGTTCTATTCCCATAACACCCAAACATG
GTACAAAGAAATAACTGACTCCTACAAGTTATTTTCTGATGTTCATGTGG
AGGGTACACACACACACACACACACTCACACACTCTCACATCTCACACAC
ATGTACACACACAAATGTGAATAAATGTCATGCAAGATACCAGTCTGATG
TTGGTCTTTATTAAAAATCTTATTAGAAATGAACATGAAGGATTTATATT
GACCCACTCATCTCTTTTTACTCCCCTTCTTTTTCCCTTTATTTACCCTC
TCTCCTTTCCCCCCTTGTTTTTTCCTCTCTACTTTTCCTTTTCTGCTTTT
CCACCTCTTTCTCTTCTTTCCCCCCCTTTTTTTCTCTCCCCTCTTTCTTT
TCTTTCTTTTTTCCCCTTTTTTTCCCTCTTCTCCACTGTTTTTATACCTA
CTTTTTTTATTTTTGCAATACCCCCTCCTCTCTACCCACTTTATTTCTCC
CTCCTTTCCTATTTTATATTCTTCTTCCCCCCCCTCTCTGTTTCCCCCTT
TTTTCCACCCCTTACTTCATCCTT
CCGAAANAACCTATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCATAGGCACCCAG
TGAGTACTCCAGAGAAGAAAAACCGACTCACAGCAAGAACAGTCAACGAA
CATCAACAAAGATGGTTGGTCAGGGGATAATGTACCTACTGTCTCAATGA
CACTACATCTAAAAGCCCTTTTGATAATTCTGTCCTTCGCCAAAGCTTGG
CTGCATCAATGAATCCACAGGTTTTCTTGAAATCTGACTTAAACCCTTGG
GTAAAGAAGGATTTGTAAGATAGTTTGAGTATGGTAAAGGTGCTTGCAAC
ACAAGCCTAGCATCCAGAGTTTGGTTCTCAGAACCCCGGTAAAGGTGGAA
GGAGAGAACCAACCTCCACAGAGTTATCCCTCCAATGGCCCACACATGTG
CCCTCAGCCATACCTGCCCCCCCCCCCTATGGTTACCTTCCCCCCCCTTT
CCAATTTATTAATGATTTATTTATAATTAATTAAAATGGGAAAAGGGGGC
CGAACCTCCCCCTGGCTTCCTTAAATCCACAAATTTGTTAAGAGGAACCA
CCCACCCTTTTTCTTAAAGGTTGTCTTTTTTCATTTTTTCTACAATTTCT
TTTTGGGATTTAACAACATTAAATCTTTGTGATAAAAATATTAAAAAATT
TTTTTTTCTCTTTCTTCAAAAAAAAAAACTTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_i06.b1 MSMg01no533_i06.b1 CHROMAT_FILE:
MSMg01no533_i06.b1 PHD_FILE: MSMg01no533_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:44 2005
         (272 letters)



>mm_chr8_59941287_59941958
          Length = 672

 Score =  499 bits (258), Expect = e-146
 Identities = 261/262 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattcacagttcttatagtgcaaattaaacacaaagttatggaaatgtggatctgtgag 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattcacagttcttatagtgcaaattaaacacaaagttatggaaatgtggatctgtgag 254

                                                                       
Query: 71  ggtggtgtttacagatcttagaaaactgagaagatagtaatttgggctggtaagatggct 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggtggtgtttacagatcttagaaaactgagaagatagtaatttgggctggtaagatggct 194

                                                                       
Query: 131 cagtgggtaaggacacttgctgtcaagtcgggtgacctgagttctattcccataacaccc 190
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 193 cagtgggtaaggacacttgctgtcaagtcgggtgacctgagttctattcccagaacaccc 134

                                                                       
Query: 191 aaacatggtacaaagaaataactgactcctacaagttattttctgatgttcatgtggagg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aaacatggtacaaagaaataactgactcctacaagttattttctgatgttcatgtggagg 74

                                 
Query: 251 gtacacacacacacacacacac 272
           ||||||||||||||||||||||
Sbjct: 73  gtacacacacacacacacacac 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no533_i06.g1 MSMg01no533_i06.g1 CHROMAT_FILE:
MSMg01no533_i06.g1 PHD_FILE: MSMg01no533_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:44 2005
         (238 letters)



>mm_chr8_59749838_59750475
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcataggcacccagtgagtactccagagaagaaaaaccgactcacagcaagaacagtc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 actcataggcacccagtgagtactccagagaagaagaaccgactcacagcaagaacagtc 260

                                                                       
Query: 61  aacgaacatcaacaaagatggttggtcaggggataatgtacctactgtctcaatgacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgaacatcaacaaagatggttggtcaggggataatgtacctactgtctcaatgacact 320

                                                                       
Query: 121 acatctaaaagcccttttgataattctgtccttcgccaaagcttggctgcatcaatgaat 180
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 321 acatctaaaagcccttttgataattttgtccttcgccaaagtttggctgcatcaatgaat 380

                                                                     
Query: 181 ccacaggttttcttgaaatctgacttaaacccttgggtaaagaaggatttgtaagata 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacaggttttcttgaaatctgacttaaacccttgggtaaagaaggatttgtaagata 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)