BAC Information

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BAC

Clone NameMSMg01-534H09
Chromosome8 (Build37)
Map Location 84,835,245 - 84,998,645
singlet/doubletdoublet
Overlap geneIl15
Upstream geneInpp4b, LOC671182
Downstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534H09.T7 (MSMg01no534_h09.b1)MSMg01-534H09.TJ (MSMg01no534_h09.g1)
ACCAG602141AG602142
length745800
length of high quality
(start - end)		667 (41 - 707)168 (70 - 237)
definitionCHROMAT_FILE: MSMg01no534_h09.b1 PHD_FILE: MSMg01no534_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:59 2005CHROMAT_FILE: MSMg01no534_h09.g1 PHD_FILE: MSMg01no534_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,835,245 - 84,835,907)(84,998,482 - 84,998,645)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAATGTTTCAAAAATACTTTTCTGGCTTACTTACTCTTTAAAAATACTTG
AAAGTACAGTTGTTTTCCTGTCATGTGTGTCAACTGCTTCTCCTACTATT
CTATGGAAGATGAAGATATGGGTTGGTTCCTGGTGATAAACATATCAAAA
CAGTTATAAGCTATTTAAAATGTCCAGAGTAACATTTGTGTTTTTCTGAA
CTGGATTAGCATCATTCTCTGATCTAGATGAATAAAGATTATATACACTA
AATAGTAACCACAATAGGAGCCTGCTCTACATGTTCACTGGTGAAAAATA
CCTACATATCTACAACAATAATATGCTGTGTACTAGTTTAAATAATAATG
CTGAATAGATACCTTGACATGACATATTATTGGATATGATATATCATGGG
GTCAGAGTCAAGTAAGGATGAAAATTCTCATCCATTGGTTAAAACAAAAC
AAAACAAAAAAAACCAGTCAATAGAGAAAGTCTAGAATTAAAAAGAACCA
AGACAGGTAGATCAGGCGTAGGTCAAGGGCATTGTGTTTGTCATTTGTCT
CATGAAAAGAAGATCATATATGTGGAGTATTTTTATTAAATTGGGATACA
TATTAAACACAGCACATTTCTCTCTTCTCTCTCATCCCTCTTCTCCCCAC
TTCCTAGATGCATTTTGTACCAAAATATAATTTTTCAAATTTGAA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGGTTTTGTCTTCTAAAATGAGGACATTTT
CCTCCAGCTTTTGCAGAGGCTGACTCAGACCTGTGCTAGTCTTTATGTGG
GAACTAGAGAAAAAAACTTTAGGAGTGGGTCAGAGTGAGACAAGAAGGAG
GGGACAGCTCAGCTCACTAGAGCAAATCACATGGNTGNTTNTNNTAGAAC
GGGCCNAATTTNNNNNNNNNCCCCCCCCCCCNCTTTTTTTCTTCTTTTCC
CCCCCTCCCCTCCTGTGGGTGGGGGTGTTTTTCTTTTTTTCTCCCCTTTT
TTCATTTTTTGCCTGTTATTTTTTTTGTTTTTCCTTTTCTCTTCTTTCCT
CCTCTTCCTCTTTTGCTTTGTGTTGGGTTCAGCTCTTCTCCTCCTTCTCT
TCTTGTCTATTTGCGTGGTGCTTTATGATATAAATACGTTGGGTCTGCCT
TTTTTTTCCTTCCTTTAGTCTTTCTTACTGTGCTTCTGTTTCGTCCTATT
TTTGTTTTTCTTATTCGCTTTTGTTTGTGCCCTTATCGTTTACTCTATGT
ATGATGCGGCTTTTTCTCTCGTCATTTGTTCTACCCTTTTTTTAAGCCTT
ATTTTGGGTTGTCCTTTTCTCCTTTGATATCTTACATTTGTTGTACAGAC
TTGAGGGGGTACGTAAATTTAGTTGTATTTCCGTGGACTTTTTCCTTCAA
TTTCCCCTTTCCTTTGCTTAACTTTCTCCCCCTTCTCTTCCGACTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_h09.b1 MSMg01no534_h09.b1 CHROMAT_FILE:
MSMg01no534_h09.b1 PHD_FILE: MSMg01no534_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:59 2005
         (667 letters)



>mm_chr8_84835041_84836107
          Length = 1067

 Score = 1282 bits (663), Expect = 0.0
 Identities = 663/663 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatgtttcaaaaatacttttctggcttacttactctttaaaaatacttgaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatgtttcaaaaatacttttctggcttacttactctttaaaaatacttgaaag 264

                                                                       
Query: 65  tacagttgttttcctgtcatgtgtgtcaactgcttctcctactattctatggaagatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacagttgttttcctgtcatgtgtgtcaactgcttctcctactattctatggaagatgaa 324

                                                                       
Query: 125 gatatgggttggttcctggtgataaacatatcaaaacagttataagctatttaaaatgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatatgggttggttcctggtgataaacatatcaaaacagttataagctatttaaaatgtc 384

                                                                       
Query: 185 cagagtaacatttgtgtttttctgaactggattagcatcattctctgatctagatgaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagagtaacatttgtgtttttctgaactggattagcatcattctctgatctagatgaata 444

                                                                       
Query: 245 aagattatatacactaaatagtaaccacaataggagcctgctctacatgttcactggtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagattatatacactaaatagtaaccacaataggagcctgctctacatgttcactggtga 504

                                                                       
Query: 305 aaaatacctacatatctacaacaataatatgctgtgtactagtttaaataataatgctga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaatacctacatatctacaacaataatatgctgtgtactagtttaaataataatgctga 564

                                                                       
Query: 365 atagataccttgacatgacatattattggatatgatatatcatggggtcagagtcaagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagataccttgacatgacatattattggatatgatatatcatggggtcagagtcaagta 624

                                                                       
Query: 425 aggatgaaaattctcatccattggttaaaacaaaacaaaacaaaaaaaaccagtcaatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggatgaaaattctcatccattggttaaaacaaaacaaaacaaaaaaaaccagtcaatag 684

                                                                       
Query: 485 agaaagtctagaattaaaaagaaccaagacaggtagatcaggcgtaggtcaagggcattg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaaagtctagaattaaaaagaaccaagacaggtagatcaggcgtaggtcaagggcattg 744

                                                                       
Query: 545 tgtttgtcatttgtctcatgaaaagaagatcatatatgtggagtatttttattaaattgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtttgtcatttgtctcatgaaaagaagatcatatatgtggagtatttttattaaattgg 804

                                                                       
Query: 605 gatacatattaaacacagcacatttctctcttctctctcatccctcttctccccacttcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gatacatattaaacacagcacatttctctcttctctctcatccctcttctccccacttcc 864

              
Query: 665 tag 667
           |||
Sbjct: 865 tag 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_h09.g1 MSMg01no534_h09.g1 CHROMAT_FILE:
MSMg01no534_h09.g1 PHD_FILE: MSMg01no534_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:59 2005
         (168 letters)



>mm_chr8_84998282_84998849
          Length = 568

 Score =  317 bits (164), Expect = 2e-91
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggttttgtcttctaaaatgaggacattttcctccagcttttgcagaggctgactcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttggttttgtcttctaaaatgaggacattttcctccagcttttgcagaggctgactcaga 305

                                                                       
Query: 61  cctgtgctagtctttatgtgggaactagagaaaaaaactttaggagtgggtcagagtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cctgtgctagtctttatgtgggaactagagaaaaaaactttaggagtgggtcagagtgag 245

                                                       
Query: 121 acaagaaggaggggacagctcagctcactagagcaaatcacatg 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acaagaaggaggggacagctcagctcactagagcaaatcacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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