BAC Information

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BAC

Clone NameMSMg01-534L15
Chromosome8 (Build37)
Map Location 48,695,039 - 48,695,414
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a
Downstream geneLOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534L15.T7 (MSMg01no534_l15.b1)MSMg01-534L15.TJ (MSMg01no534_l15.g1)
ACCAG602344AG602345
length774771
length of high quality
(start - end)		379 (37 - 415)541 (69 - 609)
definitionCHROMAT_FILE: MSMg01no534_l15.b1 PHD_FILE: MSMg01no534_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:20 2005CHROMAT_FILE: MSMg01no534_l15.g1 PHD_FILE: MSMg01no534_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTC
TGTAGACCAGGCTGGTTTCAAACTCAGAGATCTGCCTGCCTCTACCTCCC
ACGTGCAAGTATTACATTTTTTTAAGTCTTTACTAATTACTCCAAGACAT
GGACACTGAAGTATTTATAAGACATAAGTCTGTGGTTGCTTCGAAATGCA
CAAAGAGAAGGATTATATTGGGGAGATACACAACATAAGATGAGGGGAAT
TTGACAAGTGTTGAAATTGCAGACGGATACAAGAACACAATTAGTCCATG
TTAGAAAAATTAGATAACAAAAAGTTAAATAATGAGTCACTCCTAGGATT
ACCACACTAAGTGACCTGGCGAAAGTTTCCTGGGCACAGTATGGGGAGTG
GGGGAAGGGGGGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNN
TNNNNNNNNNNNNNTNTNNNNNNNNNNNNNNNNNNTTNTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNNTTTT
TTTTTTTTTNNTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTNTTT
TTTTTTTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTTTTNNNTTTTNTTT
TNTTTTTTTTTTTTTTTTTTTNTTTTNNTTTTTTNTTTTTTTTTTTTNNT
TTTTTTNTTTTNTTTTTTNTTTTTTTTTTTTTTTTTNNTTTTNNTNNNTT
TTTTTTTTTTTTTTTTTTNNTTTT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCACACATATATGAGGGTATCCGAGGAGGAC
AGAAGAGGGTGTTGGATCCCCCTGGAGCTGGAGTTACAGATAGTTGTGAG
TTGCTCAACCTCAGTGGTAAGAATGGAGTTCGGGGCCTCTGGGGGAGCAA
TGAGCACTACTGAGCCATCTCTTCAGCCCCTAACCCCTACCATTTATTAA
TAATATTAATTATTATTATTATTTATTTTCTTTATTTACATTTCAAATGT
TATCCCTTTTCCTGGTTTCCCCTCCAAAAACCCCCTATTCCCTCTCCCCG
TCCCCTGCTCACCAACCCTTCCACTCCTGCTTCCTGGCCCTGGCATTCCC
CTACATTGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATT
GATGACTGACTAGGCCATCCCATTTAGGTTTTGACAATGAAACTAAGGAG
TGACTTTCAAAAGGTTTTGACAGAAGAGTCTGGCACTTCCAGAGGACCTG
GTTTGATTCCTGGAACCTACATGGTGGCTCACAAACATCTGTAACTCGAG
TTCTGGAGGGTTGATGCCCTCTTCTGGCCTCCATAGGAACCAGGTACACA
AAAGGTAGAGAAAATACACACAGGTAAAATACCAATACAGGGTAAAATGG
AATAAAATAATTTAAATTGCTGGGCAGTGGTGACACATGCCTTTTATCCC
AGCATTTGGGAGTCAGAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_l15.b1 MSMg01no534_l15.b1 CHROMAT_FILE:
MSMg01no534_l15.b1 PHD_FILE: MSMg01no534_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:20 2005
         (379 letters)



>mm_chr8_48694836_48695614
          Length = 779

 Score =  690 bits (357), Expect = 0.0
 Identities = 372/377 (98%), Gaps = 2/377 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtagaccaggctggtttcaaactcagagatctgcctgcctctacctcc 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcttcaaactcagagatctgcctgcctctacctcc 263

                                                                       
Query: 64  cacgtgcaagtattacatttttttaagtctttactaattactccaagacatggacactga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacgtgcaagtattacatttttttaagtctttactaattactccaagacatggacactga 323

                                                                       
Query: 124 agtatttataagacataagtctgtggttgcttcgaaatgcacaaagagaaggattatatt 183
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actatttataagacataagtctgtggttgcttcgaaatgcacaaagagaaggattatatt 383

                                                                       
Query: 184 ggggagatacacaacataagatgaggggaatttgacaagtgttgaaattgcagacggata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggggagatacacaacataagatgaggggaatttgacaagtgttgaaattgcagacggata 443

                                                                       
Query: 244 caagaacacaattagtccatgttagaaaaattagataacaaaaagttaaataatgagtca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caagaacacaattagtccatgttagaaaaattagataacaaaaagttaaataatgagtca 503

                                                                       
Query: 304 ctcctaggattaccacactaagtgacctggcgaaagtttcctgggcacagtatggggagt 363
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 ctcctaggattaccacactaagtgacctggcgaaagtttcctggtcacagtatggggagt 563

                            
Query: 364 gggggaagggg-ggaga 379
           |||||| |||| |||||
Sbjct: 564 ggggga-ggggaggaga 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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