Query= MSMg01no535_a21.b1 MSMg01no535_a21.b1 CHROMAT_FILE:
MSMg01no535_a21.b1 PHD_FILE: MSMg01no535_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:45 2005
(710 letters)
>mm_chr8_49604424_49605540
Length = 1117
Score = 1270 bits (657), Expect = 0.0
Identities = 697/713 (97%), Gaps = 7/713 (0%)
Strand = Plus / Minus
Query: 5 gaattccacattagctcggaccatagtgtgacacctcgtttcaaaatcaaattcaccaat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gaattccacattagcacggaccatagtgtgacacctcgtttcaaaatcaaattcaccaat 757
Query: 65 ataaacaaacaaacaaaaaacaaagcaaaaaagtagactttttaatagccccctttttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ataaacaaacaaacaaaaaacaaagcaaaaaagtagactttttaatagccccctttttaa 697
Query: 125 gaaggg-gaaaaatccagtcttttttacattcttttcatga-----tttattttccatat 178
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 696 gaagggaaaaaaatccagtcttttttacattcttttcatgatttattttattttccatat 637
Query: 179 ggcactgcctccttgaattaggagcactgaagttcttctcactgcatggtttggtaccga 238
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gacactgcctgcttgaattaggagcactgaagttcttctcactgcatggtttggtaccga 577
Query: 239 taaaatgattgccagtaggaaatattttcagcagaagacacacttagcgcccgtcacctg 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 576 taaaatgattgccagtaggaaatattgtcagcagaagacacacttagcgcccgtcacctg 517
Query: 299 ccagatgtcatagcctggcgacacaggctgcagaggagtgtcctggtctttgcctttgtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ccagatgtcatagcctggcgacacaggctgcagaggagtgtcctggtctttgcctttgtg 457
Query: 359 atcacgtgtttgctgccgagctgcagttccctaccgatgcccagcttcgggagacaggat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atcacgtgtttgctgccgagctgcagttccctaccgatgcccagcttcgggagacaggat 397
Query: 419 aagcctgggagaagatcaaccttgaaagtagcttataaattttgaaaacatcaagtcaac 478
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 396 aagcctgggagaagatcaaccttgaaagtagcttataaatttggaaaacatcaagtcaac 337
Query: 479 ccattgtagctcagggactgtctgtgaactcactggcctgtttcccagagctgcctccat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccattgtagctcagggactgtctgtgaactcactggcctgtttcccagagctgcctccat 277
Query: 539 cctaggaaccattggttcacaacaatcaacctcaa-taggatcggtgatcttgatatagt 597
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 276 cctaggaactgttggttcacaacaatcaacctcaaataggatccgtgatcttgatatagt 217
Query: 598 ctagtgccgtagaattatatttgatttttaaaaatattttattctcataccattagtatt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctagtgccgtagaattatatttgatttttaaaaatattttattctcataccattagtatt 157
Query: 658 gaaaacgggtgattaagtgaaatctgcaaaagtcagacgtagtaccaaaacca 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaaaacgggtgattaagtgaaatctgcaaaagtcagacgtagtaccaaaacca 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1117
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1107
Effective search space: 774900
Effective search space used: 774900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_a21.g1 MSMg01no535_a21.g1 CHROMAT_FILE:
MSMg01no535_a21.g1 PHD_FILE: MSMg01no535_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:46 2005
(562 letters)
>mm_chr8_49456121_49457080
Length = 960
Score = 946 bits (489), Expect = 0.0
Identities = 544/563 (96%), Gaps = 4/563 (0%)
Strand = Plus / Plus
Query: 1 ttcacggtcaccgtgagctcgctttttctaaacctcccctgcgagcgccacgaccttcta 60
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ttcacggtcaccgtgagctcactttttctaaacctcccctgtgagcgccacgaccttcta 260
Query: 61 gaccacagccacattctgtcagagcctaggagacaactagaataaaggtgcacacagtgt 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccacagctacattctgtcagagcctaggagacaactagaataaaggtgcacacagtgt 320
Query: 121 gcctacagaacagagtggaagtgactccatcacggggaggacagcgggataggctctgtg 180
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gcctacagaacagaatagaagtgactccgtcacggggaggacagcgggataggctctgtg 380
Query: 181 tagtgcaaatcccaggtgtcaggaaggaaacggtatgatcaagcaacttcatgtactgtg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tagtgcaaatcccaggtgtcaggaaggaaatggtatgatcaagcaacttcatgtactgtg 440
Query: 241 ttagtaccggccagccctcagcctctcaaactgctctgtagtttgaagctatgatttgtc 300
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttagtaccagtcagccctcagcctctcagactgctctgtagtttgaagctatgatttgtc 500
Query: 301 ttggcaaagagtggggggtgggggggaa-cctattgcctgtgtggatgtctggtaagatt 359
|||||||||||| ||||| ||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 501 ttggcaaagagtaggggg-gggggggaaacctactgcctgtgt--atgtctggtaagatt 557
Query: 360 gtaaaaggttacctcttctggaaaactgtctgatccagctcttgttacaactcagaggtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtaaaaggttacctcttctggaaaactgtctgatccagctcttgttacaactcagaggtt 617
Query: 420 gtggaagttgatgtggaaatctcagctcattgcacagcccggctgaaggcaacactagtc 479
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 618 gtggaagttgatgtggaaatctcagctcattgcacagccctgccgaaggcaacactagtc 677
Query: 480 ataaggatggaggtgatatcatgtcctctacagggatggacacatgaataaaggaagtgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ataaggatggaggtgatatcatgtcctctacagggatggacacatgaataaaggaagtgt 737
Query: 540 gggtacatgttgggaacaaaata 562
|||||||||||||||||||||||
Sbjct: 738 gggtacatgttgggaacaaaata 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 960
Length adjustment: 10
Effective length of query: 552
Effective length of database: 950
Effective search space: 524400
Effective search space used: 524400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
