BAC Information

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BAC

Clone NameMSMg01-535N13
Chromosome8 (Build37)
Map Location 100,908,996 - 100,909,317
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535N13.T7 (MSMg01no535_n13.b1)MSMg01-535N13.TJ (MSMg01no535_n13.g1)
ACCAG603200AG603201
length757784
length of high quality
(start - end)
326 (48 - 373)588 (77 - 664)
definitionCHROMAT_FILE: MSMg01no535_n13.b1 PHD_FILE: MSMg01no535_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:46 2005CHROMAT_FILE: MSMg01no535_n13.g1 PHD_FILE: MSMg01no535_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAGAGGATTTGGAGACTGTCTTATCTAATTTCTTTGCTTCAT
AGTCAGGGTAAATGATGCACGGACCAGGGAAATGTCATGTCACAAATCAC
ATTAGTATTTTTTTTTCTGAGATTTAGGTCCTAAATTAACACAGAAGAAA
AATTGATAAAAATTACACCATAGAAAAAATTCTTCAGTTCAATTTATTAA
ACATTTAAGTACCAAACAAGTGGAAGGTTGACAGCATGCAAAGGTTTCCT
GTAAGGAAGACATATTTATTTAAGATATTATGCTGAGTATTTAACAAGTC
AGCCAATAATTACTGAATTATAGATATCTAACTTTTTACCTAAAAGATTT
AATTTAGGGAAAATGATGATCATGCAAGCNAATCCAGAAGTGACATGTAA
TTTAAAACAAAGCAATCACAGAATGTCTCTGAAGTTAGAATTGATCTGGG
GAAAATCAGAGTTATAAGACAAGGTTGAAAAAACTAAACCTTTAAGTTAA
GGGGGGGATAAAAAAAATTTATCCGGCAGGAAAAAAAAAACCCCCCCCAA
AAAAANTTTTTCCCCCCGGGGGGGGAAAACACCCCCCCCCCCCCCCCAAC
AACAAAGAGGGGGGGGGGGGGGAGGGAGGAAAAAAAAAAAAGGGGCTTTT
TTTTTTTTTTTTTTTTTGGGGGGGGCCCCCCCCCCCAAAAAAAAAAAAAA
AAAAAAA
NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TGAAAAATTCAAGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGTTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCAGTTCCTCAGAAAATTCGATATAGTACTACAGGAGGATC
CTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCGAAAA
TGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACCCAAACACAAAGGAACTCGCACAATATGTACTCACTGATAA
GTGGATATTAGCTCAGAAACTTAGGATACCCCAGATATAAGATACAATTT
TGCTAAACACATGAAATTCTAGAAGAAGGAAGACCAAAGTGTGGACACTT
TGCCCCCTTTTAGAAATGGGGAACAAACACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_n13.b1 MSMg01no535_n13.b1 CHROMAT_FILE:
MSMg01no535_n13.b1 PHD_FILE: MSMg01no535_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:46 2005
         (326 letters)



>mm_chr8_100908792_100909517
          Length = 726

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagaggatttggagactgtcttatctaatttctttgcttcatagtcagggtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagaggatttggagactgtcttatctaatttctttgcttcatagtcagggtaa 264

                                                                       
Query: 65  atgatgcacggaccagggaaatgtcatgtcacaaatcacattagtatttttttttctgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatgcacggaccagggaaatgtcatgtcacaaatcacattagtatttttttttctgag 324

                                                                       
Query: 125 atttaggtcctaaattaacacagaagaaaaattgataaaaattacaccatagaaaaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttaggtcctaaattaacacagaagaaaaattgataaaaattacaccatagaaaaaatt 384

                                                                       
Query: 185 cttcagttcaatttattaaacatttaagtaccaaacaagtggaaggttgacagcatgcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcagttcaatttattaaacatttaagtaccaaacaagtggaaggttgacagcatgcaa 444

                                                                       
Query: 245 aggtttcctgtaaggaagacatatttatttaagatattatgctgagtatttaacaagtca 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 aggtttcctgtaaggaagacatatttatttaagatattatgatgagtatttaacaagtca 504

                                 
Query: 305 gccaataattactgaattatag 326
           ||||||||||||||||||||||
Sbjct: 505 gccaataattactgaattatag 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)