BAC Information

Click to search

BAC

Clone NameMSMg01-535O22
Chromosome8 (Build37)
Map Location 74,622,890 - 74,623,377
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372
Downstream geneOlfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535O22.T7 (MSMg01no535_o22.b1)MSMg01-535O22.TJ (MSMg01no535_o22.g1)
ACCAG603266AG603267
length769778
length of high quality
(start - end)		492 (50 - 541)572 (82 - 653)
definitionCHROMAT_FILE: MSMg01no535_o22.b1 PHD_FILE: MSMg01no535_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:53 2005CHROMAT_FILE: MSMg01no535_o22.g1 PHD_FILE: MSMg01no535_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTGCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACCCTGGTGTTCTATTTCTGATATCTCTCAGGCAAGTGCA
ACCAGCCAGCATCTACAGTTGAAGTCTGTGGTTAAGCTAGAGAGCATAGG
ACAGCTCTGGTGAAAGAACAGAGCACACAGCTCCCCATACACCCTGGTGC
AGGTGTGGGACTTTGAAGAGATCAAGATGACACACAAGGATGAAGGTCGA
TCAAGAAATGTCTGGGACTGTGAAGAAAGACTTTTTCCATATCCTTGGCA
GAGAGATCTGAAAATCAAGAACAGTAAGGAATGGATATTTGGGATGGACT
GTTTGTGGGTGTGTTTGCAGGGAGACACAATATCTGACTGTTAGGTTTCT
TTTGAGTGTGTGTATCTCTATGTGTATGTACATAGGTATGTACGTGTGTA
TGCATGTGTGTGTTTGTGTGTGCATATATTTGTTTGTATGTATATGGTTT
TCTTTGTATGTATATGTGTGTATGTTTGAATATATGTGTGTATGAAGTAN
TTGTTTTATTTTATATTTTTTTTTGTTTTTTTTTNNNTTTTTTTTTATTT
TTTTTATATTTTTTATTATTTTTTTTTTTTATATTTATAATATTNTATTT
TTTATTAATAATTTTTATTTTTTTAATTTATTATATATTATTTATATATT
TATTTTATATTTTTTTATATTTATTTTTTTTTATTTTTTTATATTAATTT
TTTTTTTTTATTTTAATTT

NTTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACTAAAACCATCTGGT
CCTGGGCTTTTTTTTGTTGGGAGGTTTTAATGACTTCTATTTCCTTAGGG
GTTGTGGGGTTGTTTAGTTTACCTGATCTTGATTTAACCTTGGTATGTAG
TATCTGTCTAGAAAATCATCATTTCCAAGAAGCAGTTTTGTTGATTCTTT
TTATTGTTTTCTTTGTTTCTAATTGGTTAACTTCTCCTCCTCTTGGATGT
GCTTGCTTCTTTTTGTTCTAGGACTTTCAGGTGTGCTGTTAAGTTGCTAG
TATAGGATCTTCCCAATTTCTTTAGGTAGGTGCTTAGTACTATGAATTTT
CCTCTTAGCACTGTTTTCATTGTGTTCCATGAGTTTGGATATGCTGTGCC
TTCATTTTCATTAATTTCTAGAAAGTATTTCATTTCTTTCTTTATTTCTT
CCCTGACCCAGAGTTTGAGTAAAAAGTTGTTCAGTTTCCATGCATCTGAG
GACTTTCTGTTGTTTTTGTTGTAATTGATACAGCCTTAGTCCATGGTGAT
CTGATAGGATGCATGGGATTATTTCAATCTTCTTGTATTTGTTGAGGCTT
GTTTTGTGTCCAATTATATGGTCAGTTTTAGAAAAGGTTCCATGAGGTAC
AGAGAAGAAGGTGTATTCTTTTGTTTTGGGGTGAACTGTTCGGTAGATAT
CTGTTAAATCCATTTGGTTCATACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_o22.b1 MSMg01no535_o22.b1 CHROMAT_FILE:
MSMg01no535_o22.b1 PHD_FILE: MSMg01no535_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:53 2005
         (492 letters)



>mm_chr8_74622821_74623712
          Length = 892

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaccctggtgttctatttctgatatctctcaggcaagtgcaaccagccagcatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattctaccctggtgttctatttctgatatctctcaggcaagtgcaaccagccagcatc 498

                                                                       
Query: 65  tacagttgaagtctgtggttaagctagagagcataggacagctctggtgaaagaacagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tacagttgaagtctgtggttaagctagagagcataggacagctctggtgaaagaacagag 438

                                                                       
Query: 125 cacacagctccccatacaccctggtgcaggtgtgggactttgaagagatcaagatgacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cacacagctccccatacaccctggtgcaggtgtgggactttgaagagatcaagatgacac 378

                                                                       
Query: 185 acaaggatgaaggtcgatcaagaaatgtctgggactgtgaagaaagactttttccatatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaaggatgaaggtcgatcaagaaatgtctgggactgtgaagaaagactttttccatatc 318

                                                                       
Query: 245 cttggcagagagatctgaaaatcaagaacagtaaggaatggatatttgggatggactgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggcagagagatctgaaaatcaagaacagtaaggaatggatatttgggatggactgtt 258

                                                                       
Query: 305 tgtgggtgtgtttgcagggagacacaatatctgactgttaggtttcttttgagtgtgtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtgggtgtgtttgcagggagacacaatatctgactgttaggtttcttttgagtgtgtgt 198

                                                                       
Query: 365 atctctatgtgtatgtacataggtatgtacgtgtgtatgcatgtgtgtgtttgtgtgtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atctctatgtgtatgtacataggtatgtacgtgtgtatgcatgtgtgtgtttgtgtgtgc 138

                                                                       
Query: 425 atatatttgtttgtatgtatatggttttctttgtatgtatatgtgtgtatgtttgaatat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atatatttgtttgtatgtatatggttttctttgtatgtatatgtgtgtatgtttgaatat 78

                   
Query: 485 atgtgtgt 492
           ||||||||
Sbjct: 77  atgtgtgt 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |