BAC Information

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BAC

Clone NameMSMg01-537A20
Chromosome8 (Build37)
Map Location 12,296,765 - 12,449,849
singlet/doubletdoublet
Overlap geneLOC100040175, EG434280, EG434279, Sox1
Upstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
Downstream gene1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537A20.T7 (MSMg01no537_a20.b1)MSMg01-537A20.TJ (MSMg01no537_a20.g1)
ACCAG604116AG604117
length755753
length of high quality
(start - end)
286 (51 - 336)650 (81 - 730)
definitionCHROMAT_FILE: MSMg01no537_a20.b1 PHD_FILE: MSMg01no537_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:19 2005CHROMAT_FILE: MSMg01no537_a20.g1 PHD_FILE: MSMg01no537_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,449,572 - 12,449,849)(12,296,765 - 12,297,414)
sequence
NNTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATGAAATTAAATTAATCTTGCAAGAACTTATGGTCTCG
ATCTCAGATATTTAACCAGAAGAACTGAAAGTATGTATACACACACACAT
ATAACGCAGAGACACACACAAATCACTTTCGAAAATGTTTATGACAACTT
TTAAAAAAAATGTGGTTTTGAGACTGCCTTTGCTTTCCAAGTGCTGGGAT
TAAAGCTATATACCACCACAGCCACCAGCTTTTAAATTTTATTTCTAATA
TCTCCATGTGGGGAAATTGAAGGAGAAATGTATAAACAAACAAACAAACT
AACAAAAACATTGTGGTTTTGGTTGGATAAACTGTTCTCAAATACAATGT
GAAAAGCAAAATCTACTAAGGAAAAATTAAAACTATCAAAATTAGAAAGT
TTGGCTCTGCCCAAATCACCACTAATAGATAAAAGTAAGACACAAACCTA
ACTGTAGAGCGGATATGCTCACAGTGAGGTCACCACTTATGGAGGACAAA
AGAAATTAAAAGTCTCCCTACTTCCGCGTGTGTGTGTGTGTGTGAGCGTG
TGAGTGTGTGTGTGTGTGCTGTAGTTGCTTAGCCATCTCTCCAGCTCAAA
TAAGATTCTGTTGTAAAGAGGAATAAAAGCTATGCAGGAAGATGTCGTTC
AGTTCTAGATGAGCCCGAACAATGAGTTAAGGGGCAATCTAAGTTATACC
GTGAA
NNNNCCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTGTGGGCTTCAGCTCA
TCACATAAAGATGAGATAGAGGAGTCAAGCTCAGAATTAGAGACGTGATC
TAGTTGTCGTGTGTCTCAGTTCATTCCCAGGTGATGGCCAGAGAGTCACG
TGAGTAGCCCTAACTTCCAAGAAAAAGGAGAAGGGAATCCAGTCATGGGC
CCAGAAGAAAAAGCCAAGCATGTAGATGAAGCCCTGCTGATTGAAGAAAG
GGTGACCATATTTTGAGTTAGAAGTCACATTGACATATGATAATGGTACC
ATGTCTAATTCTCATCCTGACATATAAAGAAACAGATCTATAAGGGTGTG
GGTGGATGGTTAGACAAATGGACAGATAGAAGGCTTAGAGCCATGCTACT
TTTAGTGTATTCTCTTGATCCCCTGGGTTGTCCTATGGAGCTCAGCAGTG
CTGCTTGCTAGGCCTAGAGGAGTTTATTCCCTGAGATGGTATACCACAAC
AGTGCTTAGGGCCTATGAAATATTCACCTTCCTTTTCAATATTCAAGAAG
GGAGACAGAGACGGGAAGGAAGAAGAGAATAGCAGGTGGCTACGTGTTCT
CCAGCACCTTGTGTTAACAAAGAAGACCAGGACATTGAAGGTCTGGACAG
CAGTGACAAAGGCCAGTTGGGTCACGGGAGGCTGCCACATTGAGCTGCGA
TGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_a20.b1 MSMg01no537_a20.b1 CHROMAT_FILE:
MSMg01no537_a20.b1 PHD_FILE: MSMg01no537_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:19 2005
         (286 letters)



>mm_chr8_12449477_12450162
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 276/278 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatgaaattaaattaatcttgcaagaacttatggtctcgatctcagatattta 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 gaattctcatgaaattaaattaatcttgcaagaacttatggtctagatctcagatattta 314

                                                                       
Query: 65  accagaagaactgaaagtatgtatacacacacacatataacgcagagacacacacaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 accagaagaactgaaagtatgtatacacacacacatataacgcagagacacacacaaatc 254

                                                                       
Query: 125 actttcgaaaatgtttatgacaacttttaaaaaaaatgtggttttgagactgcctttgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 actttcgaaaatgtttatgacaacttttaaaaaaaatgtggttttgagactgcctttgct 194

                                                                       
Query: 185 ttccaagtgctgggattaaagctatataccaccacagccaccagcttttaaattttattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttccaagtgctgggattaaagctatataccaccacagccaccagcttttaaattttattt 134

                                                 
Query: 245 ctaatatctccatgtggggaaattgaaggagaaatgta 282
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 133 ctaatatctccatgtggggaaattgaaggaaaaatgta 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no537_a20.g1 MSMg01no537_a20.g1 CHROMAT_FILE:
MSMg01no537_a20.g1 PHD_FILE: MSMg01no537_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:20 2005
         (650 letters)



>mm_chr8_12296565_12297614
          Length = 1050

 Score = 1195 bits (618), Expect = 0.0
 Identities = 642/650 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtgtgggcttcagctcatcacataaagatgagatagaggagtcaagctcagaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtgtgggcttcagctcatcacataaagatgagatagaggagtcaagctcagaattag 260

                                                                       
Query: 61  agacgtgatctagttgtcgtgtgtctcagttcattcccaggtgatggccagagagtcacg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacgtgatctagtagtcgtgtgtctcagttcattcccaggtgatggccagagagtcacg 320

                                                                       
Query: 121 tgagtagccctaacttccaagaaaaaggagaagggaatccagtcatgggcccagaagaaa 180
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 321 tgagtagccctaacttccaagaaaaaggagaagggagtcaagtcatgggcccagaagaaa 380

                                                                       
Query: 181 aagccaagcatgtagatgaagccctgctgattgaagaaagggtgaccatattttgagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagccaagcatgtagatgaagccctgctgattgaagaaagggtgaccatattttgagtta 440

                                                                       
Query: 241 gaagtcacattgacatatgataatggtaccatgtctaattctcatcctgacatataaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagtcacattgacatatgataatggtaccatgtctaattctcatcctgacatataaaga 500

                                                                       
Query: 301 aacagatctataagggtgtgggtggatggttagacaaatggacagatagaaggcttagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagatctataagggtgtgggtggatggttagacaaatggacagatagaaggcttagag 560

                                                                       
Query: 361 ccatgctacttttagtgtattctcttgatcccctgggttgtcctatggagctcagcagtg 420
           |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacactacctttagtgtattctcttgatcccctgggttgtcctatggagctcagcagtg 620

                                                                       
Query: 421 ctgcttgctaggcctagaggagtttattccctgagatggtataccacaacagtgcttagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcttgctaggcctagaggagtttattccctgagatggtataccacaacagtgcttagg 680

                                                                       
Query: 481 gcctatgaaatattcaccttccttttcaatattcaagaagggagacagagacgggaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctatgaaatattcaccttccttttcaatattcaagaagggagacagagacgggaagga 740

                                                                       
Query: 541 agaagagaatagcaggtggctacgtgttctccagcaccttgtgttaacaaagaagaccag 600
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 741 agaagagaatagcaggtggctacatgttcttcagcaccttgtgttaacaaagaagaccag 800

                                                             
Query: 601 gacattgaaggtctggacagcagtgacaaaggccagttgggtcacgggag 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gacattgaaggtctggacagcagtgacaaaggccagttgggtcacgggag 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)