BAC Information

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BAC

Clone NameMSMg01-537F20
Chromosome8 (Build37)
Map Location 8,753,461 - 8,753,873
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537F20.T7 (MSMg01no537_f20.b1)MSMg01-537F20.TJ (MSMg01no537_f20.g1)
ACCAG604354AG604355
length746752
length of high quality
(start - end)
424 (50 - 473)524 (80 - 603)
definitionCHROMAT_FILE: MSMg01no537_f20.b1 PHD_FILE: MSMg01no537_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:43 2005CHROMAT_FILE: MSMg01no537_f20.g1 PHD_FILE: MSMg01no537_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTAGGACATTCCTTGCTGCTTAGCTTTCGGCTTTTGTGATTT
TTTTTTTTTTTTTTTTTTTTTAAAGTCAGCCCCTTTTCTTTGGATTCTGT
CTTCTCGGTTTTCTTTACTGGCATCTTTCTGGTTTACTAACTCTAAAATG
CATTTCGGGGTAAGTTTGTATATAAACAATGGGCAGCTGGAGTCCCTGGG
CATCTGTTTCACAGGAGATGGGGGAAGGTGCAGGAAGGGTGTGAAGGGCC
AGTGATGGCTTTTAGCCTCTTTAGTCTTCAGAGCCACACCCTTCTCTATC
AGCCTATGTGAGCCTGTAATGGACTCAGTTTTACTCTGTAGTGGGGCTTA
GTTCACCTTTACTCCGCTCTAGAAGAGGAGCTCTGAGGGCTGTGATCTTC
CTGGGTCACAGTGGATATTCTAGGATGGCAGAAGGCACCAAGAGGAGCAG
GCTGAGCTCCAGTCCTCCAGCAGAATGACATGACTCCCAGGGTTGGTCAC
TGATCCGGATGGGGGGAGGGCTGCTCACAAGCATGAGTCCCCTGCGCATT
CTGCTCTTGACGTAGGGATGACAAGGAGTTGAGGTTCTCCCCAAAAACCT
CTGCTCTCAGGATACTGTAACAACCTTCACCCAGGTGAAGTCTGAAACTA
AGATAACCCCAATCACAACACTAGCAGGTCCACGTCCCAATTTCTG
NAGACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCCCATACATAAACATGAT
AAAAGCAATCTACAGCAAACCAGTAGCCAGCATCAAAGTAAATGGTGAGA
AGCTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTC
TCTCCCTACCTATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATAAG
ACAAAAAAAGGAGATCAAAGGGATACAAATTAGAAAGGAAGAAGTCAAAA
TATCACTTTTTGCAGATGATATGATAGTATATATACGTGACCCTAAAAAT
TCCACCAGAGAACTCCTAAGCCTGATAAACAGCTTCAGTGAAGTAGCTGG
ATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGGACA
AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACA
AATAATATAAAATACCTAGGCATGACTCTAACTAAGGAAGTGAAAGATCT
GTATGACAAGAACTTCATGTCTCTGAAGAAAGAAATTAAAGAAGATCTCA
GAAGATGGAAAGATCTCTCATGCTCATGGATCGGCAGGATCAATATAGTA
AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCAT
TCAAAATTCAACTCAATTCTTCAACGAATTAGAAAGGGGAATCGGCTGAT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_f20.b1 MSMg01no537_f20.b1 CHROMAT_FILE:
MSMg01no537_f20.b1 PHD_FILE: MSMg01no537_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:43 2005
         (424 letters)



>mm_chr8_8753250_8754073
          Length = 824

 Score =  733 bits (379), Expect = 0.0
 Identities = 407/421 (96%), Gaps = 9/421 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggacattccttgctgcttagctttcggcttttgtgatttttttttttttttt 64
           ||||||||||||| |||||||| |||||||||||||||||||||        ||||||||
Sbjct: 212 gaattctaggacaatccttgcttcttagctttcggcttttgtga--------tttttttt 263

                                                                       
Query: 65  tttttttta-aagtcagccccttttctttggattctgtcttctcggttttctttactggc 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttttttacaagtcagccccttttctttggattctgtcttctcggttttctttactggc 323

                                                                       
Query: 124 atctttctggtttactaactctaaaatgcatttcggggtaagtttgtatataaacaatgg 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 atctttctggtttactaactctaaaatgcattttggggtaagtttgtatataaacaatgg 383

                                                                       
Query: 184 gcagctggagtccctgggcatctgtttcacaggagatgggggaaggtgcaggaagggtgt 243
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gcagctggagtccctgggtatctgtttcacaggagatgggggaaggtgcaggaaggatgt 443

                                                                       
Query: 244 gaagggccagtgatggcttttagcctctttagtcttcagagccacacccttctctatcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagggccagtgatggcttttagcctctttagtcttcagagccacacccttctctatcag 503

                                                                       
Query: 304 cctatgtgagcctgtaatggactcagttttactctgtagtggggcttagttcacctttac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctatgtgagcctgtaatggactcagttttactctgtagtggggcttagttcacctttac 563

                                                                       
Query: 364 tccgctctagaagaggagctctgagggctgtgatcttcctgggtcacagtggatattcta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccgctctagaagaggagctctgagggctgtgatcttcctgggtcacagtggatattcta 623

            
Query: 424 g 424
           |
Sbjct: 624 g 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)