BAC Information

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BAC

Clone NameMSMg01-537O01
Chromosome8 (Build37)
Map Location 36,472,538 - 36,604,456
singlet/doubletdoublet
Overlap geneThex1
Upstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
Downstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537O01.T7 (MSMg01no537_o01.b1)MSMg01-537O01.TJ (MSMg01no537_o01.g1)
ACCAG604742AG604743
length742754
length of high quality
(start - end)		580 (50 - 629)342 (81 - 422)
definitionCHROMAT_FILE: MSMg01no537_o01.b1 PHD_FILE: MSMg01no537_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:22 2005CHROMAT_FILE: MSMg01no537_o01.g1 PHD_FILE: MSMg01no537_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,603,955 - 36,604,456)(36,472,538 - 36,472,879)
sequence
GAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGAGTTATTGCTTACTAAATTCTATGTTCTATCTTGCCTGC
TCTAGATCCAATTGGTCAATTTTCTGGGCCTTGCTCTCCCGGCTCCTTCA
CATGGTGGCCACACCTCTGTCTGCATGGCATCTCTCCTCTCCTCCACACT
CTCCCTGCATGGCTGATCTCTTCTCTCCCCCTGTCTCAAGCCCAAGAAAT
CCCTGCCTATGTCCTCTCCAGCTATTGGCTGCTGGTATCTTTATTTACCT
ATCAGAACCAACTGGGGGAAGGTTCCCCGAAGCTCCATGGAGACCCTCTC
TTGTAAGCAGTTTTTTTGGGGGAGGGACATAATTTTGGGGGGAACAGAAT
TAACATCGTAGTACAAGCAGCTACATCCCCAGATAAGGGAGGGGCCTTTC
GAGTCACGTTGAAACAAACATGCTTGGGTCTAAAAATGATGGTGTGGGGT
GCTAGGATACCCTGCCTCTGTAGTCAGCTTCTCAGTGAGCTCAAACAACC
CATGCATGATAATATACTAATAGAATGTATATTAAAACCAGCTAGGCAGC
TAGCCCCAGTCTCTCACTTCCCACATCTGAGATTACAAATGCCTATTTTT
TCTTAATGAAACTTGTGGGCATTAAACTTGAATCCTTATGCTTCAGGCAA
GCATATATCTACTGGGGCATCTCTTCCAGCCAAAATCTTTTT

TGGCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCTTTAGGAGAATCAG
TGCATTATGGCGGGGGGTGGGGGGTGGGGAGGGGGCGGGCGGTGCTTGGC
ATCACAATCCTGTGCCAGCGTGCCCAGCCAAAACCATATCTTCTTTATCT
ATATGGATTCTATCAACGTACAAACCTCTTCAAGACTGAAAGTGTTACTA
AGGAGGAAAAGGGACTTTTCATCACCAGAGAAATGCTATCTTATCTGGAA
AACATAATGAGCACACACACACGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGCACCCAGTCACAGAGTTTCCAAAGATACAGAGGGATGAA
GTCCTCTTGCTATTACTTCAGGTACGTAGTGGGATGTTGGAGACAGGGTT
TCTCTGTGTAGCCTTGGCTGTTCTGAAACTCATTCTGTAGACAAAGCTGG
CCTCAAGATCTGCCCACTTCTGTGTGCCACCAGTATGCAAGTCTTTTGGT
ATGATTTCTACCACCTATAATGACTTANACAGACATCTGTCCACACTAAC
CGACTGACATACAAACAGACCAAACATATACACTAGGGCCTATGAATTTT
GGTTTCTACCCACTTTTCTTTAAAACCCATAAAAATCTTGCCCCTGGGGT
CCATCCTTTGTTGCCCTCTTTTTATACTAAAAATACCTTCCTTTATTTTT
TATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_o01.b1 MSMg01no537_o01.b1 CHROMAT_FILE:
MSMg01no537_o01.b1 PHD_FILE: MSMg01no537_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:22 2005
         (580 letters)



>mm_chr8_36603477_36604456
          Length = 980

 Score =  971 bits (502), Expect = 0.0
 Identities = 502/502 (100%)
 Strand = Plus / Minus

                                                                       
Query: 79  gccttgctctcccggctccttcacatggtggccacacctctgtctgcatggcatctctcc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 gccttgctctcccggctccttcacatggtggccacacctctgtctgcatggcatctctcc 921

                                                                       
Query: 139 tctcctccacactctccctgcatggctgatctcttctctccccctgtctcaagcccaaga 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tctcctccacactctccctgcatggctgatctcttctctccccctgtctcaagcccaaga 861

                                                                       
Query: 199 aatccctgcctatgtcctctccagctattggctgctggtatctttatttacctatcagaa 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aatccctgcctatgtcctctccagctattggctgctggtatctttatttacctatcagaa 801

                                                                       
Query: 259 ccaactgggggaaggttccccgaagctccatggagaccctctcttgtaagcagttttttt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ccaactgggggaaggttccccgaagctccatggagaccctctcttgtaagcagttttttt 741

                                                                       
Query: 319 gggggagggacataattttggggggaacagaattaacatcgtagtacaagcagctacatc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gggggagggacataattttggggggaacagaattaacatcgtagtacaagcagctacatc 681

                                                                       
Query: 379 cccagataagggaggggcctttcgagtcacgttgaaacaaacatgcttgggtctaaaaat 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cccagataagggaggggcctttcgagtcacgttgaaacaaacatgcttgggtctaaaaat 621

                                                                       
Query: 439 gatggtgtggggtgctaggataccctgcctctgtagtcagcttctcagtgagctcaaaca 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatggtgtggggtgctaggataccctgcctctgtagtcagcttctcagtgagctcaaaca 561

                                                                       
Query: 499 acccatgcatgataatatactaatagaatgtatattaaaaccagctaggcagctagcccc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acccatgcatgataatatactaatagaatgtatattaaaaccagctaggcagctagcccc 501

                                 
Query: 559 agtctctcacttcccacatctg 580
           ||||||||||||||||||||||
Sbjct: 500 agtctctcacttcccacatctg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_o01.g1 MSMg01no537_o01.g1 CHROMAT_FILE:
MSMg01no537_o01.g1 PHD_FILE: MSMg01no537_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:22 2005
         (342 letters)



>mm_chr8_36472338_36473079
          Length = 742

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccctttaggagaatcagtgcattatggcggggggtggggggtggggagggggcgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccctttaggagaatcagtgcattatggcggggggtggggggtggggagggggcgggc 260

                                                                       
Query: 61  ggtgcttggcatcacaatcctgtgccagcgtgcccagccaaaaccatatcttctttatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgcttggcatcacaatcctgtgccagcgtgcccagccaaaaccatatcttctttatct 320

                                                                       
Query: 121 atatggattctatcaacgtacaaacctcttcaagactgaaagtgttactaaggaggaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatggattctatcaacgtacaaacctcttcaagactgaaagtgttactaaggaggaaaa 380

                                                                       
Query: 181 gggacttttcatcaccagagaaatgctatcttatctggaaaacataatgagcacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggacttttcatcaccagagaaatgctatcttatctggaaaacataatgagcacacacac 440

                                                                       
Query: 241 acgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacccagtcacagagtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacccagtcacagagtttc 500

                                                     
Query: 301 caaagatacagagggatgaagtcctcttgctattacttcagg 342
           ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 caaagatacagagggatgaagtcgtcttgctattacttcagg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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