BAC Information

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BAC

Clone NameMSMg01-538B13
Chromosome8 (Build37)
Map Location 107,809,990 - 108,010,419
singlet/doubletdoublet
Overlap gene4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1
Upstream geneCmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3
Downstream geneLOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538B13.T7 (MSMg01no538_b13.b1)MSMg01-538B13.TJ (MSMg01no538_b13.g1)
ACCAG604908AG604909
length746744
length of high quality
(start - end)		625 (37 - 661)531 (66 - 596)
definitionCHROMAT_FILE: MSMg01no538_b13.b1 PHD_FILE: MSMg01no538_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:40 2005CHROMAT_FILE: MSMg01no538_b13.g1 PHD_FILE: MSMg01no538_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,809,990 - 107,810,610)(108,010,082 - 108,010,419)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTC
TGACGGTCAGATCTAGAGCTAAAACTAAGGTCTTAAACATGATTCTAATT
TCAGTGTTTAGCACTTACCCAATCTGGAAGTTGGCAGAATACAGACCGCC
TCAGATCCCTAGATGGACCACAGGTGAGAGAAGCCCACAATCTGCTTTGT
ACCGATGGCATCTTCCCAGTCCCACCTCCCCACTTCACCTAGCTCATTAC
AGCCTCCCGCCCTTTGGTAATCAGTTTGAATGAATGCACTTGCTCAGGCC
AGTCCCCACATGAAATACTCTTCTCTTTCCCATTGATCAGGATGGAATTA
GAATCTGCTTTTGGGAAGCAGAGGAAACCCAGCGCATTCAAACCAGCCCC
TGGTCTGTCACCTAGCTGAGATATCTTTCCCAGTGGGCATCCAAGGCCAC
TGTCAGAGAACTCACCCCTGACTGCGTGTCAGGGCTCAGTGCAATCCACT
CTCTCCCCAGAGACACACTGAAGGCGTCAGCCTCTGAACTCCCCTTGCCT
GCTCAGAAACTCAACTGTAGCCTTTCTCCTTGATCCTACATCACCAGTCT
TTCTGGCAACTGAAGAAATACATGCTGTTGTTAAAAAACATCTTATAAAA
CAAAACAAAACCTTTCTGAGAGTCCGCGCCTAACTCCCCGCAGCTGCTCT
CCTGGTGCGGCACGATACCCTGAGTCACTTACACACCATCTCCCTT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGTCCTCTCAGCTAATAAGTGCAAAGCCAAAGCC
AAACTTAGTTGTCCTGGGTTAAATATGCTTGGCCCAAGTCTGTGTTTTAA
GTGGCACTATTAGGAGTTGTGGTCTTTTTGGAGTAGGTGTGGCCTTGTTG
GAGGAAGTGTATCACTGTGAGGGTGGGCTCTGAGACACTTTTCCTAGCTG
CCTGGAAGACAGTCTTCCGGCTGCCTTTGGATCAAGATGTAGAACTCTAG
GTCCTTCTCCAGCACCATGTCTGCCTGATGTTGCCATGCTTTCTGCCATG
ATGATAATGGACTGAACCTCTGAAACTATAAGCCAGCCCCAATTAAATTT
TGTCCTTTATAAGACTTGCTTTTGTCATGGTGTCTCTTTCCAGCAATGAA
AACCCTAAGACACTAGACCTGTTTCCTTCAAAGCCAGGGAATCTCCTATC
CTATGTACTTCTTATCGAAGATGGGCTAAGGGATCAGAGGACTTGACCTA
AGTCTCAGAACTAAACAAAGGTCACTCCATTTAGCTTTGAGATGAGACCA
TTCAGAGATGACTTCACACGCTTGCTTGGCCTGCAGGAATCTCTCAGCCT
TAAGAGGGCTGAGGGAAATGTGACTATTAATGAATGTCCCGTATATGGGG
TGACAGCCAGTTGGCAGAAGATGTAGGGGTAAAAGGTATGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_b13.b1 MSMg01no538_b13.b1 CHROMAT_FILE:
MSMg01no538_b13.b1 PHD_FILE: MSMg01no538_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:40 2005
         (625 letters)



>mm_chr8_107809786_107810810
          Length = 1025

 Score = 1170 bits (605), Expect = 0.0
 Identities = 617/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctgacggtcagatctagagctaaaactaaggtcttaaacatgattctaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattctctctgacggtcagatctagagctaaaactaaggtcttaaacatggttctaatt 264

                                                                       
Query: 65  tcagtgtttagcacttacccaatctggaagttggcagaatacagaccgcctcagatccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagtgtttagcacttacccaatctggaagttggcagaatacagaccgcctcagatccct 324

                                                                       
Query: 125 agatggaccacaggtgagagaagcccacaatctgctttgtaccgatggcatcttcccagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatggaccacaggtgagagaagcccacaatctgctttgtaccgatggcatcttcccagt 384

                                                                       
Query: 185 cccacctccccacttcacctagctcattacagcctcccgccctttggtaatcagtttgaa 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccacctccccgcttcacctagctcattacagcctcccgccctttggtaatcagtttgaa 444

                                                                       
Query: 245 tgaatgcacttgctcaggccagtccccacatgaaatactcttctctttcccattgatcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaatgcacttgctcaggccagtccccacatgaaatactcttctctttcccattgatcag 504

                                                                       
Query: 305 gatggaattagaatctgcttttgggaagcagaggaaacccagcgcattcaaaccagcccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatggaattagaatctgcttttgggaagcagaggaaacccagcgcattcaaaccagcccc 564

                                                                       
Query: 365 tggtctgtcacctagctgagatatctttcccagtgggcatccaaggccactgtcagagaa 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggcctgtcacctagctgagatatctttcccagtgggcatccaaggccactgtcagagaa 624

                                                                       
Query: 425 ctcacccctgactgcgtgtcagggctcagtgcaatccactctctccccagagacacactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcacccctgactgcgtgtcagggctcagtgcaatccactctctccccagagacacactg 684

                                                                       
Query: 485 aaggcgtcagcctctgaactccccttgcctgctcagaaactcaactgtagcctttctcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaggcgtcagcctctgaactccccttgcctgctcagaaactcaactgtagcctttctcct 744

                                                                       
Query: 545 tgatcctacatcaccagtctttctggcaactgaagaaatacatgctgttgttaaaaaaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgatcctacatcaccagtctttctggcaactgaagaaatacatgctgttgttaaaaaaca 804

                                
Query: 605 tcttataaaacaaaacaaaac 625
           ||||| |||||||||||||||
Sbjct: 805 tcttaaaaaacaaaacaaaac 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_b13.g1 MSMg01no538_b13.g1 CHROMAT_FILE:
MSMg01no538_b13.g1 PHD_FILE: MSMg01no538_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:40 2005
         (531 letters)



>mm_chr8_108009489_108010419
          Length = 931

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 194 acagtcttccggctgcctttggatcaagatgtagaactctaggtccttctccagcaccat 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 acagtcttccggctgcctttggatcaagatgtagaactctaggtccttctccagcaccat 872

                                                                       
Query: 254 gtctgcctgatgttgccatgctttctgccatgatgataatggactgaacctctgaaacta 313
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 871 gtctgcctgatgttgccatgctttctgccatgatgataatagactgaacctctgaaacta 812

                                                                       
Query: 314 taagccagccccaattaaattttgtcctttataagacttgcttttgtcatggtgtctctt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 taagccagccccaattaaattttgtcctttataagacttgcttttgtcatggtgtctctt 752

                                                                       
Query: 374 tccagcaatgaaaaccctaagacactagacctgtttccttcaaagccagggaatctccta 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tccagcaatgaaaaccctaagacactagacctgtttccttcaaagccagggaatctccta 692

                                                                       
Query: 434 tcctatgtacttcttatcgaagatgggctaagggatcagaggacttgacctaagtctcag 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tcctatgtacttcttatcgaagatgggctaagggatcagaggacttgacctaagtctcag 632

                                                 
Query: 494 aactaaacaaaggtcactccatttagctttgagatgag 531
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aactaaacaaaggtcactccatttagctttgagatgag 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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