BAC Information

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BAC

Clone NameMSMg01-538L03
Chromosome8 (Build37)
Map Location 105,521,483 - 105,658,200
singlet/doubletdoublet
Overlap geneLOC100041368
Upstream geneCdh11, EG667618
Downstream gene1600027J07Rik, LOC100041397, LOC667656, Cdh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538L03.T7 (MSMg01no538_l03.b1)MSMg01-538L03.TJ (MSMg01no538_l03.g1)
ACCAG605363AG605364
length748750
length of high quality
(start - end)		614 (36 - 649)598 (65 - 662)
definitionCHROMAT_FILE: MSMg01no538_l03.b1 PHD_FILE: MSMg01no538_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:24 2005CHROMAT_FILE: MSMg01no538_l03.g1 PHD_FILE: MSMg01no538_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,521,483 - 105,522,092)(105,657,603 - 105,658,200)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TTACTAAACTTTTTCATCAATTGTCAAAACCAGTTTACACTGCTATATCC
CATGGGCAGTCTGTAATTTCCTGAAATTACAAGGAAAATAATATCGAGGG
AGCCTTTGCCAATGCCTTAAGAGAAACCGTATCAAGAGGCAGCACTCAGC
TACCTTCCTTTGTCCTGCATGTGAGTTAAATCACTCCCCACAGAAATATA
ATAGTCCATGAAAATATGTGTGTCTTGGCCTGTAAAAAGCTAACATGGAG
CAGAGTGGGAAGGATGCATTCAACAGCTGTGAACTGATTGAGTCAGAGCA
TCTGATAAAAGGTAATTTTAATATTCTATCTCACTCACACCTCTACTTCT
CAAAGGAAAAGTTATCACATCAATTTCATAGATGAGAAAAACGACCCCAG
GGATTGGGTTGACATCCAGGCAGTTGGTGATGAGAGGTAGAATAAGATTT
CCAGTCAATGCTTTCTGGATCTGGAGCTGGTGTCCATTAGCATACTGTAT
GTGAGAGCTGAGTTCACCCTTTGACTTAATCCTCAAAGTAGTCTTGTCAG
GAGAGCTATCCATGACACCTATCAATAATAACTGTCAAGCTCTCTCCTTC
TCTTGTTCCCAGAATTGATCTGGATATCTTAACAAATTACATTTGCCTTG
TGAACTGTAAAGACTTAGACGCCTGTGAAGGTTCCTCTGTGCTAGTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGTAGAAGGTGACTAGCCTTGATATCAAGACAGGA
TCTGCATATGAGCTCTTCCATTGGCCAGCTCTATAAGCATGCAGAGAATT
TTCTCTGAGTTTCATTGCAACAAGCATCACCTGGAAAATGGTGGGTACTT
TTGTGGTTGGGGAACGTGGTTCTATTTGTCATTAGCATTATATTCTAACT
TTCTTGATCTACAGCTATTTGTAAAATGATGTGATATTTGTTCCTTTATT
CCTTTGGATTGCAAACTTTCCAAAAGATTGTAAAATGCCTTATACACATT
TACTCTTTTCCATGGCTTTGTGAGCTTCTCAGTTATAACTCGCCTGAAGT
TACACAGGTAGGAAGTGCTGAACCAGATCTAATCTTCTGTTTAATGATGT
CAAATTTTGTGTTCTTCCTATTGTACCCAGCTATTTTCCAGGTGCTACAG
GGGTTGTCAAAATTTCTTCTGAGGAAGAGAGATGAAATTGCCCTAGATAA
TTTAGGGCAGATGAAAAGAAAGCTTTCAAGTTTATAACACAAAACCTGGA
ATGTGACTTTGTCTCCTTCAGGGGCCCCCAGGAGTATCTAACAGTGATAT
TGCATTTTGGTTTGGTTTATGTGTTTTCTGTGACACAGAGAGAATGTTTT
TGTTAGTTCTCCTGTCCTCTTCAAGTAATCTGTTTGGTCACTCATTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_l03.b1 MSMg01no538_l03.b1 CHROMAT_FILE:
MSMg01no538_l03.b1 PHD_FILE: MSMg01no538_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:24 2005
         (614 letters)



>mm_chr8_105521279_105522292
          Length = 1014

 Score = 1141 bits (590), Expect = 0.0
 Identities = 605/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaccttactaaactttttcatcaattgtcaaaaccagtttacactgctatatc 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattctcaccttactaaactttttcatcaattgtcaaaaccagtttacactgctacatc 264

                                                                       
Query: 65  ccatgggcagtctgtaatttcctgaaattacaaggaaaataatatcgagggagcctttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatgggcagtctgtaatttcctgaaattacaaggaaaataatatcgagggagcctttgc 324

                                                                       
Query: 125 caatgccttaagagaaaccgtatcaagaggcagcactcagctaccttcctttgtcctgca 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatgccttaagagaaaccatatcaagaggcagcactcagctaccttcctttgtcctgca 384

                                                                       
Query: 185 tgtgagttaaatcactccccacagaaatataatagtccatgaaaatatgtgtgtcttggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgagttaaatcactccccacagaaatataatagtccatgaaaatatgtgtgtcttggc 444

                                                                       
Query: 245 ctgtaaaaagctaacatggagcagagtgggaaggatgcattcaacagctgtgaactgatt 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ctgtaaaaagctaacatggagcagagtgggaaggatgcactcaacagctgtgaactgatt 504

                                                                       
Query: 305 gagtcagagcatctgataaaaggtaattttaatattctatctcactcacacctctacttc 364
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagtcaaagcatctgataaaaggtaattttaatattctatctcactcacacctctacttc 564

                                                                       
Query: 365 tcaaaggaaaagttatcacatcaatttcatagatgagaaaaacgaccccagggattgggt 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 tcaaaggaaaagttatcacatcaatttcatagatgagaaaaatgaccccagggattgggt 624

                                                                       
Query: 425 tgacatccaggcagttggtgatgagaggtagaataagatttccagtcaatgctttctgga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgacatccaggcagttggtgatgagaggtagaataagatttccagtcaatgctttctgga 684

                                                                       
Query: 485 tctggagctggtgtccattagcatactgtatgtgagagctgagttcaccctttgacttaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctggagctggtgtccattagcatactgtatgtgagagctgagttcaccctttgacttaa 744

                                                                       
Query: 545 tcctcaaagtagtcttgtcaggagagctatccatgacacctatcaataataactgtcaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcctcaaagtagtcttgtcaggagagctatccatgacacctatcaataataactgtcaag 804

                     
Query: 605 ctctctcctt 614
           ||||||||||
Sbjct: 805 ctctctcctt 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_l03.g1 MSMg01no538_l03.g1 CHROMAT_FILE:
MSMg01no538_l03.g1 PHD_FILE: MSMg01no538_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:24 2005
         (598 letters)



>mm_chr8_105657403_105658400
          Length = 998

 Score = 1125 bits (582), Expect = 0.0
 Identities = 594/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtagaaggtgactagccttgatatcaagacaggatctgcatatgagctcttccattgg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cagtagaaggtgactggccttgatatcaagacaggatctgcatatgagctcttccattgg 739

                                                                       
Query: 61  ccagctctataagcatgcagagaattttctctgagtttcattgcaacaagcatcacctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccagctctataagcatgcagagaattttctctgagtttcattgcaacaagcatcacctgg 679

                                                                       
Query: 121 aaaatggtgggtacttttgtggttggggaacgtggttctatttgtcattagcattatatt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaatggttggtacttttgtggttggggaacgtggttctatttgtcattagcattatatt 619

                                                                       
Query: 181 ctaactttcttgatctacagctatttgtaaaatgatgtgatatttgttcctttattcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctaactttcttgatctacagctatttgtaaaatgatgtgatatttgttcctttattcctt 559

                                                                       
Query: 241 tggattgcaaactttccaaaagattgtaaaatgccttatacacatttactcttttccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 558 tggattgcaaactttccaaaagattgtaaaatgccttatacacatttactcttctccatg 499

                                                                       
Query: 301 gctttgtgagcttctcagttataactcgcctgaagttacacaggtaggaagtgctgaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gctttgtgagcttctcagttataactcgcctgaagttacacaggtaggaagtgctgaacc 439

                                                                       
Query: 361 agatctaatcttctgtttaatgatgtcaaattttgtgttcttcctattgtacccagctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agatctaatcttctgtttaatgatgtcaaattttgtgttcttcctattgtacccagctat 379

                                                                       
Query: 421 tttccaggtgctacaggggttgtcaaaatttcttctgaggaagagagatgaaattgccct 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttccaggtgccacaggggttgtcaaaatttcttctgaggaagagagatgaaattgccct 319

                                                                       
Query: 481 agataatttagggcagatgaaaagaaagctttcaagtttataacacaaaacctggaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agataatttagggcagatgaaaagaaagctttcaagtttataacacaaaacctggaatgt 259

                                                                     
Query: 541 gactttgtctccttcaggggcccccaggagtatctaacagtgatattgcattttggtt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gactttgtctccttcaggggcccccaggagtatctaacagtgatattgcattttggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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