XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCTG
TGTATGCTAATTGTCTTAAAATACATTTTAAATGATGAAAACCAACCAAT
TTCCATATTATTTGCCTTCTGCAATGAAATTAGCATAATACACGCTATTT
TTCTTATTTAAAACAGATGCTGTTGGCAATTGCATTAATAAGGAAGACTG
GATAACATTTTGTTGACTATCAAATGAGAGTGATAAGTTATTATTGACGT
ACCCTGGTCAGTAGTTTTGAAAGTGTGGTCTCAACTGGCAGGTAGGTTAC
TTGGACACTTCCCTAGTATGAGTCTTAAAAAGTCTCAGGATAAAGCCACA
GCCTACTTAATGAGACATCAAGTGGTCACTGTGTGAAAGATGGTTGAATA
AAAACCTTTAAGCAGAAGCGCCTTGGCACCTGGGGAGAGCAGGTGCAGCT
GCTGCTATGGATGTTTTATTAATAAGAGTTTCAAGAGCCTGCTGATTAGA
TAACACTCACCTCAGCGCTTTGCGACACAGAGAAAGCACAGACAATGCCA
ATCTAGATTTAGAATCCTTCCATTGAGCCGCCAGTGAAGGGGAGGGACCC
GTAGTCTGAGCATTGCCTTCCCACAGCTCATGCATTGGAATAGCACACTG
AGCTACTTGCCAGACTTCATAACCTCCAGGTGAGGATGAGAAAGGACATC
TATCCTGATCCCCATTCTTCCTGTCTCTGCATCCTGGTAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACACAACACTTTCATCAATGGACAGATCGTGGAA
ACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAA
TGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATAT
ACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATAAAAT
TGTTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTTCCAT
GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAAAAATATA
AATATTGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAA
TGATACATTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAG
AGTTTAATGAAAATGAAGCCACAACATACCCAAACCTATGGGACACAATG
AAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAA
ACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAG
AAAAAAAGGAAGAAAATCTACCCAAGAGGAGTAGACGGCAGGAAATAATG
AAAGTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCTCAG
AATTAACCCAATGAGGAGTTGGTTCTTTCAGAAAATCAACAAGATAGAT

Query= MSMg01no538_l21.b1 MSMg01no538_l21.b1 CHROMAT_FILE:
MSMg01no538_l21.b1 PHD_FILE: MSMg01no538_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:28 2005
         (643 letters)



>mm_chr8_68500269_68501311
          Length = 1043

 Score = 1220 bits (631), Expect = 0.0
 Identities = 637/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctgtgtatgctaattgtcttaaaatacattttaaatgatgaaaaccaaccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctgtgtatgctaattgtcttaaaatacattttaaatgatgaaaaccaaccaa 264

                                                                       
Query: 65  tttccatattatttgccttctgcaatgaaattagcataatacacgctatttttcttattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttccatattatttgccttctgcaatgaaattagcataatacacgctatttttcttattt 324

                                                                       
Query: 125 aaaacagatgctgttggcaattgcattaataaggaagactggataacattttgttgacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaacagatgctgttggcaattgcattaataaggaagactggataacattttgttgacta 384

                                                                       
Query: 185 tcaaatgagagtgataagttattattgacgtaccctggtcagtagttttgaaagtgtggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaatgagagtgataagttattattgacgtaccctggtcagtagttttgaaagtgtggt 444

                                                                       
Query: 245 ctcaactggcaggtaggttacttggacacttccctagtatgagtcttaaaaagtctcagg 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 ctcaactggcaggtaggttacttggacacttccctagtatgagtcgtaaaaagtctcagg 504

                                                                       
Query: 305 ataaagccacagcctacttaatgagacatcaagtggtcactgtgtgaaagatggttgaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 ataaagccacagcctacttaatgagacatcaagtggtcactgtgtgaaagatggttgaac 564

                                                                       
Query: 365 aaaaacctttaagcagaagcgccttggcacctggggagagcaggtgcagctgctgctatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaacctttaagcagaagcgccttggcacctggggagagcaggtgcagctgctgctatg 624

                                                                       
Query: 425 gatgttttattaataagagtttcaagagcctgctgattagataacactcacctcagcgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatgttttattaataagagtttcaagagcctgctgattagataacactcacctcagcgct 684

                                                                       
Query: 485 ttgcgacacagagaaagcacagacaatgccaatctagatttagaatccttccattgagcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgcgacacagagaaagcacagacaatgccaatctagatttagaatccttccattgagcc 744

                                                                       
Query: 545 gccagtgaaggggagggacccgtagtctgagcattgccttcccacagctcatgcattgga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gccagtgaaggggagggacccgtagtctgagcattgccttcccacagctcatgcattgga 804

                                                  
Query: 605 atagcacactgagctacttgccagacttcataacctcca 643
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atagcacactgagctacttgccagacttcataacctcca 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)