BAC Information

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BAC

Clone NameMSMg01-539G08
Chromosome8 (Build37)
Map Location 73,615,337 - 73,615,951
singlet/doubletsinglet
Overlap genenone
Upstream geneNcan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
Downstream geneLOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539G08.T7 (MSMg01no539_g08.b1)MSMg01-539G08.TJ (MSMg01no539_g08.g1)
ACCAG605898AG605899
length750754
length of high quality
(start - end)		613 (76 - 688)556 (81 - 636)
definitionCHROMAT_FILE: MSMg01no539_g08.b1 PHD_FILE: MSMg01no539_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:20 2005CHROMAT_FILE: MSMg01no539_g08.g1 PHD_FILE: MSMg01no539_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTCTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAACGTTTCGTATAGTCTTGTTGGCCCATGGATTGCATC
CCAGAACTTGGGAAGGAGGACATGAACAGATTTCTGTGAGTTAAGGCCAA
CATGCTCCATAGAGCAGTTTTCAGACCAGCATGGATACATAGTGAGATCC
TGATTCAAAAAAATGTTGTTTGTAAACATCTAAAGTAATATACAGAAGGG
ACACAAATATAAAGTACTTAAAACACTTGCTAAATATTTTTCTTATGAAT
AGCACAATAATGCGAACTTTAAAATCTATGTCACAGTACTGGATCGTCAG
CTCAGAGAACTGAAGTGAAGCATGTCAGGTTCAATGAAGGTAAGGTTTTT
ATAGTGAATATAAATATGGTATATAGTAGCCAGTCCTATTACCCTAAAGA
AGAGTAGAGATTAAGCTTCTTTCCCACTGAGTCCAGAAAAGGCAGCTCAA
CTAGCAGAAAGGAATCCAAATGCAGACAACAGTGTGAAGCGGTCCTCCCT
TCAGTTTATAGAGAACCCACATGAAGACCAAGCTGCACATCTGCTACATA
TGGGGAGGGGGTCTATGTGCAGCCCATGCATGCTCTTTGATTGGTGGTTC
AATCTCTGTGAGCCCTCATGGGCCCAGGCTACTTGATTGTGTAGGTTTTC
TTGTGGTGTCCCTGACCGCTCAGTCACAATGTTCTCCTTTGAGTTCATGT


GTTACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAACCATTACAGTTGGCC
AACCGCAGCATAAACCAAGACTTAAGCACAAATGGAAAATAAGAGGAATC
TTATGTCATAGTCTGTGAGATGGAAGGAAAGACAAGGCAGACCTCAGGAA
ATGATGATGGTAATCAAAATAATCAATGAAGAAATGAATGACTAAGGTAT
GTGTGTGGGAGGGGTACAGGTATGGAATCCAGAGCTCTGTAGACAGGCAC
AGAAGGATCACAGAAATTTTAAGAAGTCAGAGGCTAGTTTGATCTAATCT
GACTTTCATAGTGAATTCCAGCACAGCCCAACCTAGCAAGGTACTGTATT
TATAGAGATAAAATTTAAAAAGGCAAGTCTTCATTGAGCTTTGTGAATCA
ATTAATTAAATTATGCTGATCAATTAACACTACAGTGTCAACTAATAGGT
CAAATTCCCATTAACTCACTGGAGGATCTATTAATGCTACTGAAGTCAAT
TACAGCTACCGCATCAATTTGTTCTTTTATGGTCTGACATCTCCCTCACC
AGCTCAGCATCCTATCTTGCTGGACAGCTTTTCATAGGATGCTTTCTAGT
CTCACCCCAATCACTTGAAGAAAAATTGAACAGTTAACCTGTTGCAGGCA
GCATATTATTGCTTCTTCTAACCCAACCAGCACACTCCTACTCATTATCA
GTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_g08.b1 MSMg01no539_g08.b1 CHROMAT_FILE:
MSMg01no539_g08.b1 PHD_FILE: MSMg01no539_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:20 2005
         (613 letters)



>mm_chr8_73615139_73616151
          Length = 1013

 Score =  990 bits (512), Expect = 0.0
 Identities = 589/616 (95%), Gaps = 5/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcttgttggcccatggattgcatcccagaacttgggaaggaggacatgaacagatttctg 61
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tcttgttggcccatgcattgcatcccagaacttgggaaggaggacatgaacagatttctg 258

                                                                       
Query: 62  tgagttaaggccaacatgctccatagagcagttttcagaccagcatggatacatagtgag 121
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgaggtaaggccaaaatgctccatagagcagttttcagaccagcatggatacatagtgag 318

                                                                       
Query: 122 atcctgattc---aaaaaaatgttgtttgtaaacatctaaagtaatatacagaagggaca 178
           ||||||||||   |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 319 atcctgattcaaaaaaaaaatattgtttgtaaacatctaaagtaagatacagaagggaca 378

                                                                       
Query: 179 caaatataaagtacttaaaacacttgctaaatatttttcttatgaatagcacaataatgc 238
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 379 caaatataaagtacttaaaacacttgctaaatgtttttcttatgactagcacaataatgc 438

                                                                       
Query: 239 gaactttaaaatctatgtcacagtactggatcgtcagctcagagaactgaagtgaagcat 298
            |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 439 taactttaaaatctatgtcacagcactggatcatcagctcagagaactgaagtgaagcat 498

                                                                       
Query: 299 gtcaggttcaatgaaggtaaggtttttatagtgaatataaatatggtatatagtagccag 358
           |||||||| || |||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 499 gtcaggtttaacgaaggtaaggtttttatagtgaatgtaaatatggtatatagtagctag 558

                                                                       
Query: 359 tcctattaccctaaagaagagtagagattaagcttctttcccactgagtccagaaaaggc 418
           ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 559 tcctattaccctaaataagagtagagattaagctcctttcccactgagtccagacaaggc 618

                                                                       
Query: 419 agctcaactagcagaaaggaatccaaatgcagacaacagtgtgaagc-ggtcctcccttc 477
           ||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 619 agctcaactagcagacaggaatccaaatgtagacaacagtgtgaagcagg-cctcccttc 677

                                                                       
Query: 478 agtttatagagaacccacatgaagaccaagctgcacatctgctacatatggggagggggt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agtttatagagaacccacatgaagaccaagctgcacatctgctacatatggggagggggt 737

                                                                       
Query: 538 ctatgtgcagcccatgcatgctctttgattggtggttcaatctctgtgagccctcatggg 597
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctatgtacagcccatgcatgctctttgattggtggttcaatctctgtgagccctcatggg 797

                           
Query: 598 cccaggctacttgatt 613
           |||||| || ||||||
Sbjct: 798 cccaggttagttgatt 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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