Query= MSMg01no539_h20.b1 MSMg01no539_h20.b1 CHROMAT_FILE:
MSMg01no539_h20.b1 PHD_FILE: MSMg01no539_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:28 2005
(701 letters)
>mm_chr8_45698719_45699819
Length = 1101
Score = 1263 bits (653), Expect = 0.0
Identities = 686/697 (98%)
Strand = Plus / Plus
Query: 5 gaattctatatttccactttttactgttttgccatgaaaggtagatctgtcctctaacta 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatatccccactttttactgttttgccatgaaaggtagatctgtcctctaacta 264
Query: 65 cagcagattagtcctgaattattaaaatccaaatgaacccatgcccactgacttgggtta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcagattagtcctgaattattaaaatccaaatgaacccatgcccactgacttgggtta 324
Query: 125 tgcaaaaatctataattcataaggcatctgcttctgtagtggaaggtgactgcaatcatt 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tgcaaaaatctataattcataaggcatctgcttctgtaggggaaggtgactgcaatcatt 384
Query: 185 agacacacaaaccccaatagacacttaaccacaaccagggatggggaccacacctcccaa 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacacacaaaccccaatagacgcttaaccacaaccagggatggggaccacacctcccaa 444
Query: 245 gtcaggtttgttgattaaaattagaggagaaagatgaaaactcagggtgttaacacattt 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 gtcaggtttgttgattaaaattagaggagaaagatgaaaactaagggtgttaacacattt 504
Query: 305 tcatcaatggagactataattcaatagcatagaccctacctgatcataatttatataatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcatcaatggagactataattcaatagcatagaccctacctgatcataatttatataatt 564
Query: 365 gggatgtgtttttattgcattctaaaaatcaaagtatagtagtattttaaaaattgataa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggatgtgtttttattgcattctaaaaatcaaagtatagtagtattttaaaaattgataa 624
Query: 425 aggacttacaaataccataccttacaaataccatcacaatttctgtgataaaaacctacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggacttacaaataccataccttacaaataccatcacaatttctgtgataaaaacctacc 684
Query: 485 ggatctccttcccatcgtggttttgaaatctcggtttctcatcaataggaagttgctcaa 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 ggatctccttcccatcgtggttttcaaatctcggtttctcatcaataggaagttgctcaa 744
Query: 545 ctgatagcccattgattatgcatttatggataacacattatgaaagagacaggtaagact 604
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgatagcccattgattatccatttatggataacacattatgaaagagacaggtaagact 804
Query: 605 gttaaaatattatttgtacatatgtaaaatcttatctctaatcatgttttagtaattggc 664
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 805 gttaaaatattatttatacatacgtaaaatcttatctctaatcatgttttagtaattggc 864
Query: 665 taggtaatgtttatgtttaataatgctgcaactaatc 701
|||||||||||||||| ||||||||||||||| ||||
Sbjct: 865 taggtaatgtttatgtctaataatgctgcaaccaatc 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_h20.g1 MSMg01no539_h20.g1 CHROMAT_FILE:
MSMg01no539_h20.g1 PHD_FILE: MSMg01no539_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:28 2005
(694 letters)
>mm_chr8_45902902_45903998
Length = 1097
Score = 1309 bits (677), Expect = 0.0
Identities = 691/697 (99%), Gaps = 3/697 (0%)
Strand = Plus / Minus
Query: 1 atagagagaattggtacacaggctctactttcggctggatgctgggaagctgtctgtcca 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 897 atagagagaattggtacacaggctctactttcagctggatgctgggaagctgtctgtcca 838
Query: 61 tcacatgtcagtagttcataatggaacttttagtttactggatgtaggtaggttagtagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tcacatgtcagtagttcataatggaacttttagtttactggatgtaggtaggttagtagc 778
Query: 121 tgaaactctctctttctctctctctgtcttata---cccccccatacatatgcacatgca 177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 777 tgaaactctctctttctctctctctgtcttataccccccccccatacatatgcacatgca 718
Query: 178 cactgtagccaacattctgtttggcaaaaatattgtcccccatatgtttcccatacatga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cactgtagccaacattctgtttggcaaaaatattgtcccccatatgtttcccatacatga 658
Query: 238 acaagattgaaacagtacctctgtgttcagctgaatggtatatgtcaggcaaacatcagc 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 657 acaagattgaaacagtacctctgtgttcagctgaatgttatatgtcaggcaaacatcagc 598
Query: 298 ccatgagatgggttagggctaagtcccatgaacacagaagcaggctggtgggcttgttta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ccatgagatgggttagggctaagtcccatgaacacagaagcaggctggtgggcttgttta 538
Query: 358 aaaatcttggcctggtaggcttcaccacagaagtagaaaaagaccagggagcgtggtggg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaaatcttggcctggtaggcttcaccacagaagtagaaaaagaccagggagcgtggtggg 478
Query: 418 gtggcagccgaccatgaaggagagctcttgcttatgtgatgaaagccagctggtgcacac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtggcagccgaccatgaaggagagctcttgcttatgtgatgaaagccagctggtgcacac 418
Query: 478 agcgaggaaccagttcgcactgctcacgctcagaaggtttgaaattgtgatgtcacagct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agcgaggaaccagttcgcactgctcacgctcagaaggtttgaaattgtgatgtcacagct 358
Query: 538 ggcatgggctttgtgagtccccagttccaatttcgtgctttttatgagtaatggctccgt 597
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 357 ggcatgggctttgtgagtccccagttccaatttcatgctttttatgagtaatggctccgt 298
Query: 598 agttagtacccatccctaggaaatcaaaacaaaccatttttctgcccgtgacacttctta 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agttagtacccatccctaggaaatcaaaacaaaccatttttctgcccgtgacacttctta 238
Query: 658 ggaccgcagaaagcaagatttcatgtgtcccgtgcca 694
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggaccgcagaaagcaagatttcatgtgtcccgtgcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1097
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1087
Effective search space: 743508
Effective search space used: 743508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
