Query= MSMg01no540_c24.b1 MSMg01no540_c24.b1 CHROMAT_FILE:
MSMg01no540_c24.b1 PHD_FILE: MSMg01no540_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:23 2005
(626 letters)
>mm_chr8_13325932_13326958
Length = 1027
Score = 1100 bits (569), Expect = 0.0
Identities = 582/591 (98%), Gaps = 9/591 (1%)
Strand = Plus / Minus
Query: 37 aaagccagatacaatggctggtatttggagtccttgccctgctgtaaggacaggaaaccg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 aaagccagatacaatggctggtatttggagtccttgccctgctgtaaggacaggaaaccg 968
Query: 97 atccagaagctcacaggcaagctagccttgggcatgggaatgagagcaacagaaaccaca 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 atccagaagctcacaggcaagctagccttgggcatgggaatgagagcaacagaaaccaca 908
Query: 157 agggggagcctgtcttagaggtggaaggagagaacagatttctgaaagctgtcctctgac 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 agggggagcctgtcttagaggtggaaggagagaacagatttctgaaagctgtcctctgac 848
Query: 217 ctccacaggatcactaggcactccacactgccatgctccagtatccagcatacaccagtg 276
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 847 ctccacaggatcactaggca--------tgccatgctccagtatccagcatacaccagtg 796
Query: 277 ccaacacggcaggggcaaggctaccataaaagtcctaaagataagaaaacgaaattgaaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ccaacacggcaggggcaaggctaccataaaagtcctaaagataagaaaacgaaattgaaa 736
Query: 337 ggcataaatactgaacaggaagacatatgtattctcaggtggcgactgaacatggggaaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggcataaatactgaacaggaagacatatgtattctcaggtggcgactgaacatggggaaa 676
Query: 397 atcaagaaaggcactgcagttaaccagtaaacagcagtttccgtgatgcaaggtcagttc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atcaagaaaggcactgcagttaaccagtaaacagcagtttccgtgatgcaaggtcagttc 616
Query: 457 aggg-gccagggtccaatgttgcaaaataatgaaataaaataacttacagttccttataa 515
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agggagccagggtccaatgttgcaaaataatgaaataaaataacttacagttccttataa 556
Query: 516 caacaatctactggaaatgcattataaatatagtctatattagcatgaaagaaatctaat 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caacaatctactggaaatgcattataaatatagtctatattagcatgaaagaaatctaat 496
Query: 576 taaaattaattcagatttgcaaaaccccacagataaaaataaaaaatattg 626
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taaaattaattcagatttgcaaaaccccacagataaaaataaaaaatattg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space: 626472
Effective search space used: 626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_c24.g1 MSMg01no540_c24.g1 CHROMAT_FILE:
MSMg01no540_c24.g1 PHD_FILE: MSMg01no540_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:23 2005
(551 letters)
>mm_chr8_13199946_13200896
Length = 951
Score = 1019 bits (527), Expect = 0.0
Identities = 545/551 (98%)
Strand = Plus / Plus
Query: 1 ttcataagccgcatagtcaaagtcttcgggcctttcaaacccatacggatcgatcctaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcataagccgcatagtcaaagtcttcgggcctttcaaacccatacggatcgatcctaca 260
Query: 61 aacaaaaagaacctgtttccccgaaccaagtttccgcgcttgcggggatgcggctggggt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aacaaaaagaacctgtttccccgaaccaagtttccgcgcctgcggggatgcggctggggt 320
Query: 121 ccaagagctcccacacccgacacccctcggtccgcccctccgtccatcctcagttcacct 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagagctccgacacccgacacccctcggtccgcccctccgtccatcctcagttcacct 380
Query: 181 tcccttcctctcttcctcccctcctccatcccctccaccccctcatgcccctcgctctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccttcctctcttcctcccctcctccatcccctccaccccctcatgcccctcgctctcc 440
Query: 241 gtggaccagagcgcgtcccccgcgcagcatcgactggctcagacccagtccggggagggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gtggaccagagcgcgtcccccgcgcagcatcgactggctcagacccagtccggagagggc 500
Query: 301 gcccagcaccccgcgcgcacggcctccgcacccacctgggcacccgagctcgcgccgcct 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccagcaccccgcgcgcgcggcctccgcacccacctgggcacccgagctcgcgccgcct 560
Query: 361 gcgcgcgctctgcgggatccatgcggagaagggccagggaccgcgggactcaaaaccact 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 561 gcgcgcgctctgcgggatccatgcggagaagggccagggaccgcgggactcacaacctct 620
Query: 421 gcagccccgagcgctggaccccggtgcgccgctggccccggggcgcgcgagtgcttccgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagccccgagcgctggaccccggtgcgccgctggccccggggcgcgcgagtgcttccgg 680
Query: 481 cgggggcgtggccgagacgggggcggggtggggacgaggggcggagtcagtgggggcggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgggggcgtggccgagacgggggcggggtggggacgaggggcggagtcagtgggggcggg 740
Query: 541 gcggggtagag 551
|||||||||||
Sbjct: 741 gcggggtagag 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
