ATAGTGAAATAANTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTTTATTTCTTCTTACTTACAAAGAAATTTTTAAGGGA
AGAATTGAAAATTCTTTTGAAAAGAATTGAAATTATTTTATAGTATGTTT
CAAAGAAATGCCGGGAGATTGGAAGAGTGTTCTAGAGTTACATGGACTTA
CGGAGCTCATTGCGAATTTCAACAGAAGCAGAATGGCTTTAGTTTTCCTG
ATCCAACATAGAGCTGACAATTCTTTTGGGGGTGGGTCAGGAGAGGTTAT
TTACAGAGAGACAAGATTGACTGATGAATCAATAACGCAGAAGAGCTCTA
TTAAACTGTAACCCAAAAGATTGAATTGGGTGTTGCTATTGGACAATTAA
CGGGTCTGCTGCGTCTGCCTCAGATACAGTCTGAAGAATAGTCATGTTCT
GAGCTCAGATGAGAAACCAATAGACTCACGAAAACCCGGTTTCTTCTGGA
CGAATCTTTCAAATGAGACACACGGAATGGTCCTTATGAACCTATATTAA
ATTTAATAAATCATTGCAAGCTCTATTTCTTTTTAATTACATTGCCATTT
CGATGTCTGTACTTTTTTTTTAAAGACAGGGTTGTTTTTATATAGTCCTG
GTTGTCCTGAAACTATATATATATATATATATATATATAGTCCTGAAACA
CACATATGTGTGTGTGTGTATTTTATGTTGACTTGAACTATTA

TAATTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATGTCATGGATGAATCTTGG
ATTCTTATGTCATGGATGAATCTTGGATAAGTGTGACTAAGGATATAGAG
TGACAGGAATTCTTATGTCATGGATGAATCTTGGATAAGTGTGACTAAGG
ATATAGAGTGACAGGAATTCTTATGTCATGGATGAATCTTGGATTCTTAT
GTCATGGATGAATCTTGGATAAGTGTGACTAAGGATATAGAGTGACAGGA
ATTCTTATGTCATGGATGAATCTTGGATAAGTGTGACTAAGGATATAGAG
TGACAGGAATTCTTATGTCATGGATGAATCTTGGATTCTTATGTCATGGA
TGAATCTTGGATAAGTGTGACTAAGGATATAGAGTGACAGGAATTCTTAT
GTCATGGATGAATCTTGGATTCTTATGTCATGGATGAATCTTGGATAAGT
GTGACTAAGGATATAGAGTGACAGGAATTCTTATGTCATGGATGAATCTT
GGATTCTTATGTCATGGATGAATCTTGGATAAGTGTGACTAAGGATATAG
AGTGACAGGAATTCTTATGTCATGGATGAATCTTGGATTCTTATGTCATG
GATGAATCTTGGATAAGTGTGACTAAGGATATAGAGTGACAGGAATTCTT
ATGTCATGGATGAA

Query= MSMg01no540_e01.b1 MSMg01no540_e01.b1 CHROMAT_FILE:
MSMg01no540_e01.b1 PHD_FILE: MSMg01no540_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:28 2005
         (692 letters)



>mm_chr8_44506905_44507996
          Length = 1092

 Score = 1259 bits (651), Expect = 0.0
 Identities = 674/689 (97%), Gaps = 14/689 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttatttcttcttacttacaaagaaatttttaagggaagaattgaaaattct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttatttcttcttacttacaaagaaatttttaagggaagaattgaaaattct 264

                                                                       
Query: 65  tttgaaaagaattgaaattattttatagtatgtttcaaagaaatgccgggagattggaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgaaaagaattgaaattattttatagtatgtttcaaagaaatgccgggagattggaag 324

                                                                       
Query: 125 agtgttctagagttacatggacttacggagctcattgcgaatttcaacagaagcagaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgttctagagttacatggacttacggagctcattgcgaatttcaacagaagcagaatg 384

                                                                       
Query: 185 gctttagttttcctgatccaacatagagctgacaattcttttgggggtgggtcaggagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctttagttttcctgatccaacatagagctgacaattcttttgggggtgggtcaggagag 444

                                                                       
Query: 245 gttatttacagagagacaagattgactgatgaatcaataacgcagaagagctctattaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttatttacagagagacaagattgactgatgaatcaataacgcagaagagctctattaaa 504

                                                                       
Query: 305 ctgtaacccaaaagattgaattgggtgttgctattggacaattaacgggtctgctgcgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtaacccaaaagattgaattgggtgttgctattggacaattaacgggtctgctgcgtc 564

                                                                       
Query: 365 tgcctcagatacagtctgaagaatagtcatgttctgagctcagatgagaaaccaatagac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcctcagatacagtctgaagaatagtcatgttctgagctcagatgagaaaccaatagac 624

                                                                       
Query: 425 tcacgaaaacccggtttcttctggacgaatctttcaaatgagacacacggaatggtcctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcacgaaaacccggtttcttctggacgaatctttcaaatgagacacacggaatggtcctt 684

                                                                       
Query: 485 atgaacctatattaaatttaataaatcattgcaagctctatttctttttaattacattgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgaacctatattaaatttaataaatcattgcaagctctatttctttttaattacattgc 744

                                                                       
Query: 545 catttcgatgtctgtacttttttttt-aaagacagggttgtttttatatagtcctggttg 603
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 745 catttcgatgtctgtacttttttttttaaagacagggttgtttttatatagccctggttg 804

                                                                       
Query: 604 tcctgaaactatatatatatatatatatatatatagtcctgaaacacacatatgtgtgtg 663
           |||||||||||||||||||||||||          |||||||||   |||||||||||||
Sbjct: 805 tcctgaaactatatatatatatata----------gtcctgaaa---acatatgtgtgtg 851

                                        
Query: 664 tgtgtattttatgttgacttgaactatta 692
           |||||||||||||||||||||||||||||
Sbjct: 852 tgtgtattttatgttgacttgaactatta 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)