Query= MSMg01no540_f02.b1 MSMg01no540_f02.b1 CHROMAT_FILE:
MSMg01no540_f02.b1 PHD_FILE: MSMg01no540_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
(634 letters)
>mm_chr8_65589289_65590323
Length = 1035
Score = 1079 bits (558), Expect = 0.0
Identities = 602/632 (95%), Gaps = 25/632 (3%)
Strand = Plus / Plus
Query: 4 ggaattcctt-gctgtcacacgcagatgtcatgcttgagtcttacacttcttatcttcca 62
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcctttgctgtcacacgcagatgtcatgcttgagtcttatacttcttatcttcca 263
Query: 63 gagaattctagtgccatggttgcatagctatcagtccaatgggaccacactttctcacga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagaattctagtgccatggttgcatagctatcagtccaatgggaccacactttctcacga 323
Query: 123 tagtctgtaaatggttaattacattagactgaggttaaatcttacccatatattctcctc 182
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagtctgtaaacggttaattacattagactgaggttaaatcttacccatatattctcctc 383
Query: 183 taaaatagactttgtttatgagaataagaaacactaaaaggttttgttagttgtcataag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaatagactttgtttatgagaataagaaacactaaaaggttttgttagttgtcataag 443
Query: 243 atacccaagggaattagcaaagatgagacaacctttgccaaggagcatcatatgagtatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atacccaagggaattagcaaagatgagacaacctttgccaaggagcatcatatgagtatt 503
Query: 303 tggacacttatattcttgatattcttttggtatattcatatctatctatctatctatcta 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggacactcatattcttgatattcttttggtatattcatatctatctatctatctatcta 563
Query: 363 tctatctatctatctatctatctatctatctatctatctatcaattgtgtctgtcagggt 422
|||||||||||||||||| ||||||||||||||||||
Sbjct: 564 tctatctatctatctatc------------------------aattgtgtctgtcagggt 599
Query: 423 ttataggagacttgaacacacagctgcactattctcttcatgcattaaatggaaagcatc 482
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 600 ttataggagacttgaacacacagctgcactattctcttcatgcgttaaatggaaagcatc 659
Query: 483 caatatcttgaagcaggaaaatgtaattttaaaggaaagaggtactaaataaggatgcta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 caatatcttgaagcaggaaaatgtaattttaaaggaaagaggtactaaataaggatgcta 719
Query: 543 tactcttcacattgaatttgaatgttaaaaatatattttatttcattgttagtgcgtgtc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tactcttcacattgaatttgaatgttaaaaatatattttatttcattgttagtgcgtgtc 779
Query: 603 tgtgtgtacatatatctgtataggtttgtgta 634
||||||||||||||| ||||||||||||||||
Sbjct: 780 tgtgtgtacatatatttgtataggtttgtgta 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_f02.g1 MSMg01no540_f02.g1 CHROMAT_FILE:
MSMg01no540_f02.g1 PHD_FILE: MSMg01no540_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
(645 letters)
>mm_chr8_65740896_65741939
Length = 1044
Score = 1183 bits (612), Expect = 0.0
Identities = 637/646 (98%), Gaps = 3/646 (0%)
Strand = Plus / Minus
Query: 1 ttttctgttacagagtgatgctttgaaattccctgagacataaagtaaaacatagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ttttctgttacagagtgatgctttgaaattccctgagacataaagtaaaacatagagaaa 785
Query: 61 tggtcaataaaaggcctttgctttcccatttgagctgcttgggggagctgccacaatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tggtcaataaaaggcctttgctttcccatttgagctgcttgggggagctgccacaatcct 725
Query: 121 tgagtgcctcaggctgaacactatctgaaacaagcacttgacattaaacatgggcagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tgagtgcctcaggctgaacactatctgaaacaagcacttgacattaaacatgggcagatg 665
Query: 181 aacagaacgaacctggcatctaatctctcctgtttgcactaatcgagtgtggctaggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aacagaacgaacctggcatctaatctctcctgtttgcactaatcgagtgtggctaggatg 605
Query: 241 ccgtgccctgctgaaatgcttacacagcagctgcttgtgccagggagcatagttgggatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccgtgccctgctgaaatgcttacacagcagctgcttgtgccagggagcatagttgggatt 545
Query: 301 tgtgaagtcagcatacttgctagggaagaaaacatgcacatagtgtcatttcccctcggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgtgaagtcagcatacttgctagggaagaaaacatgcacatagtgtcatttcccctcggt 485
Query: 361 gatactgcctgccattagtgttacttctggccaagtcgagaagcttatgtattgggcttt 420
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 484 gatactgcctgccattagtgttatttctggccaagttgagaagcttatgtattgggcttt 425
Query: 421 catatgaatcgcattgctataatttattagtagaggctttccaacaagagaagtaaaata 480
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 catatgaatcgcattgctatcatttattagtagaggctttccaacaggagaagtaaaata 365
Query: 481 cattaccagtacagtacaatattgaaaaaaatagtcagggttaaactattcattgataca 540
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 364 cattaccagtaca--acaatatttaaaaaaatagtcagggttaaactattcattgataca 307
Query: 541 ctggctagttgtttggctcatgggactcaataagacacaggagaagcttctaatttacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctggctagttgtttggctcatgggactcaataagacacaggagaagcttctaatttacat 247
Query: 601 tttt-gaagttcatgtgagtataaacatagaattttgaaatatgac 645
|||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 246 tttttgaagttcatgtgagtataaacatagaattttcaaatatgac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
