BAC Information

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BAC

Clone NameMSMg01-540H09
Chromosome8 (Build37)
Map Location 72,450,259 - 72,583,598
singlet/doubletdoublet
Overlap geneGatad2a, LOC665649, 9130404D08Rik, Sf4
Upstream geneLOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6
Downstream geneTm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540H09.T7 (MSMg01no540_h09.b1)MSMg01-540H09.TJ (MSMg01no540_h09.g1)
ACCAG606706AG606707
length733731
length of high quality
(start - end)		528 (175 - 702)585 (77 - 661)
definitionCHROMAT_FILE: MSMg01no540_h09.b1 PHD_FILE: MSMg01no540_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:44 2005CHROMAT_FILE: MSMg01no540_h09.g1 PHD_FILE: MSMg01no540_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(72,450,259 - 72,450,786)(72,583,092 - 72,583,598)
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGGTTCCCCCACTACTCAAAGCTGATGTAATAAGAGAAAAGGC
CCAGATTGGGCTGGGTCACTTATAGGATATTGAAACACAACATCATAGTG
TCCTAGACAACCCAGTATACGGGCAGATCCTCTCATCTTAGTGACCTATG
GAGAAAGATGTAATAAAGGCAACAGGCAAGCAGCCCATAGTGAAAAGAGG
TAGAAAGTGAGTCAGAGATAGAAAGGCCCACAAGTTAAGAGATGGCAACT
GGGGCAAGAGAGCACCAGAACTAGTATTAAGGGCATATATGTAGAGTTCC
CAGAGTAGAATAATAGCTAAGAGACAAAGTGGCCTAGGGATTTCTCTCTG
AGCTTTAGGCATTGCCTGTTCTTCAAGCCACACAGTAGCCCAAGGACAGG
CTTTCTGGTAGGGACTGTAAGAGATGTGAAGTGAAGGGTCACATATGCAC
ATGCTGAGACTGTCTTGAGATATTACCCTAACAGCTGGGACACGGGTGTT
TATTCAAGACAAATTCCAGCAGACTGCTAGGGGGCCTAGTTTGCATGCTA
GGGAAGATAATATCCAACCTGTCCCCATGTTTGGCTTGTGTGTGGTTACC
CCAAAGTGGTGGGCAGTCAACTTTTCTCTCACGGACTTAGCCTTGTGCTT
CCATTAGAAGGGAAAGGTGATGGAGGAGGACCC

TAACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGCTATTCTTATCATGTAAAAA
TCTGGAAAGAAGATTTGGACATTGGAAATGAGTTTCAGTGATAGGTGAAT
CTGAGGCTTCACTGCAGAGCCCTAAGAAGCAGGGCATTCAGAAAGTGCCT
ACGGCTGGGTGCACAGCAGCAGAGTGAGTCTAACCCCAGCACTGCCTCCC
GAATAACAGTAATATCCTCCTTTGGGGCTGGGATGTGGCTCAGCATTAGA
GTCCTTGCTTAGCACACAAGAGGCCCTGAGTTTTTTCCAGAGCTCCACAG
ACAAGGGAGGTCCCTGGCCCAGACTGTGTATCAAGTTTCTACACTTATAT
GTGTGACCACAAATGTGAGCAGCATGGCACTGCTCCAGCAGTACTCACGT
GAAGGCCGGGTTATCCTTGTAGTCCTCCATAGCTACTTTCTCTAGCTCGG
GGCCTCCTTCTGCCACAAAACGGGCCAGCTTCTCTATCACTCTCCGAGTC
TCGGCTCCCTCTGGGGGTGAAACTTTAAGGAGGCTGTCAGTACAGGGCTC
CAACTCACACACCCAACAGTAACTAGGTACACTCTCTCTATAGACCGCAA
CGACAGAGGGGAGAGGATTGGGAGATGCANGAGGCTGCTGACCACCCATA
CACATGGCTCTGTGGAGGGGTGCTTGGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_h09.b1 MSMg01no540_h09.b1 CHROMAT_FILE:
MSMg01no540_h09.b1 PHD_FILE: MSMg01no540_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
         (528 letters)



>mm_chr8_72450059_72450986
          Length = 928

 Score = 1021 bits (528), Expect = 0.0
 Identities = 528/528 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcctctcatcttagtgacctatggagaaagatgtaataaaggcaacaggcaagcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatcctctcatcttagtgacctatggagaaagatgtaataaaggcaacaggcaagcagc 260

                                                                       
Query: 61  ccatagtgaaaagaggtagaaagtgagtcagagatagaaaggcccacaagttaagagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatagtgaaaagaggtagaaagtgagtcagagatagaaaggcccacaagttaagagatg 320

                                                                       
Query: 121 gcaactggggcaagagagcaccagaactagtattaagggcatatatgtagagttcccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaactggggcaagagagcaccagaactagtattaagggcatatatgtagagttcccaga 380

                                                                       
Query: 181 gtagaataatagctaagagacaaagtggcctagggatttctctctgagctttaggcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagaataatagctaagagacaaagtggcctagggatttctctctgagctttaggcattg 440

                                                                       
Query: 241 cctgttcttcaagccacacagtagcccaaggacaggctttctggtagggactgtaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgttcttcaagccacacagtagcccaaggacaggctttctggtagggactgtaagaga 500

                                                                       
Query: 301 tgtgaagtgaagggtcacatatgcacatgctgagactgtcttgagatattaccctaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgaagtgaagggtcacatatgcacatgctgagactgtcttgagatattaccctaacag 560

                                                                       
Query: 361 ctgggacacgggtgtttattcaagacaaattccagcagactgctagggggcctagtttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggacacgggtgtttattcaagacaaattccagcagactgctagggggcctagtttgc 620

                                                                       
Query: 421 atgctagggaagataatatccaacctgtccccatgtttggcttgtgtgtggttaccccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgctagggaagataatatccaacctgtccccatgtttggcttgtgtgtggttaccccaa 680

                                                           
Query: 481 agtggtgggcagtcaacttttctctcacggacttagccttgtgcttcc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtggtgggcagtcaacttttctctcacggacttagccttgtgcttcc 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_h09.g1 MSMg01no540_h09.g1 CHROMAT_FILE:
MSMg01no540_h09.g1 PHD_FILE: MSMg01no540_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
         (585 letters)



>mm_chr8_72582614_72583598
          Length = 985

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Minus

                                                                       
Query: 79  ggcttcactgcagagccctaagaagcagggcattcagaaagtgcctacggctgggtgcac 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 ggcttcactgcagagccctaagaagcagggcattcagaaagtgcctacggctgggtgcac 926

                                                                       
Query: 139 agcagcagagtgagtctaaccccagcactgcctcccgaataacagtaatatcctcctttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 agcagcagagtgagtctaaccccagcactgcctcccgaataacagtaatatcctcctttg 866

                                                                       
Query: 199 gggctgggatgtggctcagcattagagtccttgcttagcacacaagaggccctgagtttt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gggctgggatgtggctcagcattagagtccttgcttagcacacaagaggccctgagtttt 806

                                                                       
Query: 259 ttccagagctccacagacaagggaggtccctggcccagactgtgtatcaagtttctacac 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccagagctccacagacaagggaggtccctggcccagactgtgtatcaagtttctacac 746

                                                                       
Query: 319 ttatatgtgtgaccacaaatgtgagcagcatggcactgctccagcagtactcacgtgaag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttatatgtgtgaccacaaatgtgagcagcatggcactgctccagcagtactcacgtgaag 686

                                                                       
Query: 379 gccgggttatccttgtagtcctccatagctactttctctagctcggggcctccttctgcc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccgggttatccttgtagtcctccatagctactttctctagctcggggcctccttctgcc 626

                                                                       
Query: 439 acaaaacgggccagcttctctatcactctccgagtctcggctccctctgggggtgaaact 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaaacgggccagcttctctatcactctccgagtctcggctccctctgggggtgaaact 566

                                                                       
Query: 499 ttaaggaggctgtcagtacagggctccaactcacacacccaacagtaactaggtacactc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaaggaggctgtcagtacagggctccaactcacacacccaacagtaactaggtacactc 506

                                      
Query: 559 tctctatagaccgcaacgacagagggg 585
           |||||||||||||||||||||||||||
Sbjct: 505 tctctatagaccgcaacgacagagggg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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