AGCTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCAAGTGAGTCAGATAGAGATTTTTTTGTTTGTTTTTTGGTT
TTTGTTTTTTTTGAGACAGAGTTTGTAGACTTGCCTGTCCACCTCTGCCT
CTACCTTTGCCTCTGCCTTCCAAGTGCTGGGATTAAATAAAGCCCTGTGC
TACCATCTGAGGAAGATAGAGATTTTAAAACAGAGTCAAGGCTCACTTTT
TCTTGTACTTGACTTAAGTCATTATAGTGACCTCTTTTCCATAGCAGAGA
AAGCAAGAGGCCAAAATTGACCCTGGTGGCAGCAAAGACTCTTCTGGAAG
TCGCAATTGATTTATATACATAGCATATACATTTATATACATTTATATAC
ATAGCATGTTCAGAGTAAGGAGAATGATCACTAATTTTTATTTTTTTGTC
TTTGAGGTTTTCTTTTTTTTTTGTATCATAAATTCGATAAATTCAATGAC
CACAGAGAGACTGAGAATCCATTAGTTGGCCAGTATATGAAGCTGGATGA
CACTGAATTTAAAGGATCCCTGAGGGCCACTGGTCTTCAGTCCACATGGG
AAGGCCATACAGTCTGGGTTGTGATGTCCAGAAGAGAAGACAGCANGAAG
GGGGAGGGTGGGTGGCGGCAGGAACAAGGTAGATGGACTCACTGGGAAGA
CTCAGAGGCTAGCCAGTAAAAACAAAACTGTTTCCTGTGCAGCTTCCCAA
TAG

AAAAAAAAAAAAAAAGCGTGGTGAAGAAAAGAACAAGAACTCTCTAGAAA
AGGGAAAAAATTGATAAAGATAAAAAGAAATCAGATCGATAGAGGTAGAC
GGAAAAAGAAAATAGAATAAAGATAATAAGACGAGAAAAGAGAAAAGAAA
GAAGAAAATAAGCGGGAAAAAAGAGAAAAAGATAAAGAAGGAAAAATAAA
CGAGGAAAAAGAAAGAAGAGCGTGGATAGAGATAGAACGGAGGGAAAGAA
ATAGAAAAGAGATAAGAAAAACGGAGAAAAACACCGATGAAGACACAAAA
AAAAAAAATAAAGAAAAATAGTGGGAGATGAAAGGGAGAAAGAAGAAGAG
AGAAAAAAAAAAAGGGTGAGAGAAAAAGAGAGAGAAGTGAAAAAGACAAT
AAAGAAATAAAAAGAAACTGCCGGGGCGCCCGCCCAAAAAAAGAGAGGAA
ACCAAAAAAGAGAGGGGGGGGGGGGGAGGGGGTAAAAAAAAAAGAAGAGA
GACAAAACCAATAGGGGGGGGAGGACAACAAAAAGAGGGGGAGAAAAAAA
ACAGGGGGAAAACCACCACAGACGAAGAAGGGGGAGGAGGAAGAGGGGTT
TTTTTTTGGTCCTTCTCTTTTCAAGAGCCCCCCAAAAAAAAAAAAAAAAA
AAAAAAAAGAAGAGGGGGNNTTGGGGNNNNGGGGGGGGTAAAAATTAGAA
AAAAAAAAAACAACAAACCACCCACAAAAAATAAAAAAAATAAAAGGAAC
GAAAAAAAAAAAAAAGAAAAGAGAGGGTTGTTATTATAAATTAACACACC
CCCCCCCCCCGCCCCCGCGGGGGGGAGGGGGAAAAAAAAAAAAAAAAAAA
AAATAGAAAAAAGGAGGGGGGGGGGGGGGAGGCAAGCAATAAA

Query= MSMg01no540_k03.b1 MSMg01no540_k03.b1 CHROMAT_FILE:
MSMg01no540_k03.b1 PHD_FILE: MSMg01no540_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:58 2005
         (585 letters)



>mm_chr8_32191957_32192940
          Length = 984

 Score = 1085 bits (561), Expect = 0.0
 Identities = 576/581 (99%), Gaps = 1/581 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaagtgagtcagatagagatttttttgtttgttttttggtttttgtttttttt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaagtgagtaagatagagatttttttgtttgttttttggtttttgtttttttt 264

                                                                       
Query: 65  gagacagagtttgtagacttgcctgtccacctctgcctctacctttgcctctgccttcca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 gagacagagtttgtagacttgcctgtccacctctgcctctacctttgcctctgcctccca 324

                                                                       
Query: 125 agtgctgggattaaataaagccctgtgctaccatctgaggaagatagagattttaaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgctgggattaaataaagccctgtgctaccatctgaggaagatagagattttaaaaca 384

                                                                       
Query: 185 gagtcaaggctcactttttcttgtacttgacttaagtcattatagtgacctcttttccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtcaaggctcactttttcttgtacttgacttaagtcattatagtgacctcttttccat 444

                                                                       
Query: 245 agcagagaaagcaagaggccaaaattgaccctggtggcagcaaagactcttctggaagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 agcagagaaagcaagaggccaaaattgaccctggtggcagcaaagactcttctggaagtg 504

                                                                       
Query: 305 gcaattgatttatatacatagcatatacatttatatacatttatatacatagcatgttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaattgatttatatacatagcatatacatttatatacatttatatacatagcatgttca 564

                                                                       
Query: 365 gagtaaggagaatgatcactaatttttatttttttgtctttgaggttttctttttttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 565 gagtaaggagaatgatcactaatttttatttttttgtctttgaggttttcttttttttt- 623

                                                                       
Query: 425 gtatcataaattcgataaattcaatgaccacagagagactgagaatccattagttggcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtatcataaattcgataaattcaatgaccacagagagactgagaatccattagttggcca 683

                                                                       
Query: 485 gtatatgaagctggatgacactgaatttaaaggatccctgagggccactggtcttcagtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtatatgaagctggatgacactgaatttaaaggatccctgagggccactggtcttcagtc 743

                                                    
Query: 545 cacatgggaaggccatacagtctgggttgtgatgtccagaa 585
           ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 744 cacatgggaaggccatacactctgggttgtgatgtccagaa 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space:   560050
Effective search space used:   560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)