Query= MSMg01no541_i17.b1 MSMg01no541_i17.b1 CHROMAT_FILE:
MSMg01no541_i17.b1 PHD_FILE: MSMg01no541_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:14 2005
(710 letters)
>mm_chr8_80900032_80901141
Length = 1110
Score = 1015 bits (525), Expect = 0.0
Identities = 534/537 (99%)
Strand = Plus / Minus
Query: 5 gaattccttatgccatatcatacagatgtgtcctatcatatacagctgttaccactaccg 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 537 gaattccttatgccatatcatacagatgtgtcctatcctatacagctgttaccactaccg 478
Query: 65 agagtggtccattgttctgacccatggacccacactgatacatcatcgtcccagtttaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agagtggtccattgttctgacccatggacccacactgatacatcatcgtcccagtttaga 418
Query: 125 gtacaattttagagtacacttttgtgtgctctcacaatcttgccttcaaggataaatctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtacaattttagagtacacttttgtgtgctctcacaatcttgccttcaaggataaatctg 358
Query: 185 ttataaacatcagtgtgtagacatggcggtatgcctgaatgtggtgtgggcatatgtttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttataaacatcagtgtgtagacatggcggtatgcctgaatgtggtgtgggcatatgtttt 298
Query: 245 caacctacacgtgtgcatctccatgcctagcagatcataggaattttatctaaagaaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caacctacacgtgtgcatctccatgcctagcagatcataggaattttatctaaagaaaga 238
Query: 305 agtaggttatctatgtggtaagttctttaatgtgaatactaccaggttgtgttgctggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agtaggttatctatgtggtaagttctttaatgtgaatactaccaggttgtgttgctggag 178
Query: 365 ctcagggcggtgtgcatatttgctattgaccatagttccttgcaaattttactaagtgca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ctcagggcggtgtgcatatttgctattgaccatagttccttgcaaattttactaagtgca 118
Query: 425 atatttcttcagatatccattttttaacttattggccttaaaaaacaatatgtggagaat 484
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 117 atatttcttcagatatccattttttaacttattggccttaataaacaatatgtggagaat 58
Query: 485 atgaacacttaatactttaggagtaacatggttttcagaattcttgtatctacagat 541
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 57 atgaacacttaatactttaagagtaacatggttttcagaattcttgtatctacagat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space: 770000
Effective search space used: 770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_i17.g1 MSMg01no541_i17.g1 CHROMAT_FILE:
MSMg01no541_i17.g1 PHD_FILE: MSMg01no541_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:14 2005
(463 letters)
>mm_chr8_80769053_80769915
Length = 863
Score = 752 bits (389), Expect = 0.0
Identities = 441/473 (93%), Gaps = 26/473 (5%)
Strand = Plus / Plus
Query: 1 aaatgaagaatcctcctgtctcagctttccaaatttccaaatttactaggaagtgaattt 60
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgaacaatcctcctgtctcggctttccaaatttccaaatttactaggaagtgaattt 260
Query: 61 ctatttgtttatctacttacttgataattgagttatcaaaccattcatttgatcctacct 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatttgtttatctacttacttaataattgagttatcaaaccattcatttgatcctacct 320
Query: 121 gtatatatatacacatatgtacatatacatacatacatatat----------atatgtat 170
||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 321 gtatatatatacacatatgtacatatacatacatatatatatgtgtgtgtgtatatatat 380
Query: 171 atatatgtgtatattatatatatgtatctatacacacacacacacacacacacacataaa 230
|||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 atatatgt--atattatatatatgtatctatacacacacacacaca----------ta-- 426
Query: 231 cacacacacacactatggtatttcagtaattgtttaaaacattaaatgcagaagcatgat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 --cacacacacactatggtatttcagtaattgtttaaaacattaaatgcagaagcatgat 484
Query: 291 tgactggaaatggccaaattccaataacagattgtagaactacataatacagaaattaat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgactggaaatggccaaattccaataacagattgtagaactacataatacagaaattaat 544
Query: 351 ggacttttaatattcaacaagttttttttcttgttggtcttcttacttggctggcaggtc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggacttttaatattcaacaagttttttttcttgttggtcttcttacttggctggcaggtc 604
Query: 411 tgtttggtctgctgataggttggttggtttgagcaggggtgtgtgtagggggt 463
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 605 tgtttggtctgctgataggttggttggtttgagcaggggtgtgtgtagagggt 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
