Query= MSMg01no541_p16.b1 MSMg01no541_p16.b1 CHROMAT_FILE:
MSMg01no541_p16.b1 PHD_FILE: MSMg01no541_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:51 2005
(615 letters)
>mm_chr8_51464238_51465253
Length = 1016
Score = 1168 bits (604), Expect = 0.0
Identities = 610/612 (99%), Gaps = 1/612 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaatatacactgagatgacttagttaactcaaaataggatttcaaaattctac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatatacactgagatgacttagttaactcaaaataggatttcaaaattctac 264
Query: 65 tcaatgttctattaatagtatgcaaactgatttttaattagccttttggataaggtgaat 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaatattctattaatagtatgcaaactgatttttaattagccttttggataaggtgaat 324
Query: 125 aataaggaactaattataataaaaaagtcaggtcctttttttttt-cagaagagatttag 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 aataaggaactaattataataaaaaagtcaggtcctttttttttttcagaagagatttag 384
Query: 184 tgtaacaccatgtaaatttattattgtcttgctatttttttactcacacatatctcaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaacaccatgtaaatttattattgtcttgctatttttttactcacacatatctcaaat 444
Query: 244 gcacagccaaatttcagagtacagtacttaattattaattaacagtggtcttcattttca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacagccaaatttcagagtacagtacttaattattaattaacagtggtcttcattttca 504
Query: 304 tctctatggtccctgttgtctgtcttggagtaattttactgtacataagaacatttattc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctatggtccctgttgtctgtcttggagtaattttactgtacataagaacatttattc 564
Query: 364 aaggagttagaggataagggtttaagaaacattcgttaaagttcgctactccactccaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggagttagaggataagggtttaagaaacattcgttaaagttcgctactccactccaaa 624
Query: 424 cctatttctacaccattcagtggatttttgtagttttgctctctatctgggattgcagta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctatttctacaccattcagtggatttttgtagttttgctctctatctgggattgcagta 684
Query: 484 tttctcagttcctaggctgcagtgtctcccagttccttggctgcagtgtccctagttcct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttctcagttcctaggctgcagtgtctcccagttccttggctgcagtgtccctagttcct 744
Query: 544 tagctgcagtgaaccccatttttgtggctgcagtgcccctagttctttgactgcagtgtt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagctgcagtgaaccccatttttgtggctgcagtgcccctagttctttgactgcagtgtt 804
Query: 604 ccccgtttcttg 615
||||||||||||
Sbjct: 805 ccccgtttcttg 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_p16.g1 MSMg01no541_p16.g1 CHROMAT_FILE:
MSMg01no541_p16.g1 PHD_FILE: MSMg01no541_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:51 2005
(592 letters)
>mm_chr8_51575673_51576664
Length = 992
Score = 1031 bits (533), Expect = 0.0
Identities = 578/593 (97%), Gaps = 2/593 (0%)
Strand = Plus / Minus
Query: 1 catctgaaatcttctgttttgtaggtaaactattttttgaaatggtcttgactagattgt 60
|||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct: 792 catctggaatcttctgttttgtaggtaaactgtcttttgaaatggtcttgactagactgt 733
Query: 61 gttgctttcaaatttgctatatatatccaaggctgaccttaaattcctgattgttctgct 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 732 gttgctttcaaatttgctatatatagccaaggctgaccttaaattcctgattgccctgct 673
Query: 121 tcttcctcaaatcaactcctattgcaaacatgaaccactgaagcacacagcagaaatcca 180
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 672 tcttcctcaaatcaactcgtattgcaaacttgaaccactgaagcacacagcagaaatcca 613
Query: 181 ccttaggaacggagggga-cagggtttctgagaggatccagtagtgagtgaagtcaaaca 239
||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ccttaggaatgga-gggaccagggtttctgagaggatccagtagtgagtgaagtcaaaca 554
Query: 240 aagcatgctgagggaatctagtgataaaagcagtcaaagcctaaagaaatatttttatat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagcatgctgagggaatctagtgataaaagcagtcaaagcctaaagaaatatttttatat 494
Query: 300 ttacttcctcttttcattcttttatgtaaaaccttaattcttactttctacctatatata 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttcttcctcttttcattcttttatgtaaaaccttaattcttactttctacctatatata 434
Query: 360 aagccttgtaccaaccagagtaatattactcagactcgagtgcatacaataatactggta 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 433 aagccttgtaccaaccagagtaatattactcagactcaagtgcatacaataatactggta 374
Query: 420 cattggaactgctaatatttcgtagtcgtaagtctaacttgccacaggcctaaggttcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cattggaactgctaatatttcgtagtcgtaagtctaacttgccacaggcctaaggttcct 314
Query: 480 cttgttaattttccactcctcataaaatgaaggctatcttactctcagtgatacaggaaa 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 313 cttgttaattttccactcctcataaaatgaatgctatcttactctcagtgatacaggaaa 254
Query: 540 taataaaaatataaaagcaattttgtggagtgaaaatttgcaagtgtgattaa 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taataaaaatataaaagcaattttgtggagtgaaaatttgcaagtgtgattaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
