BAC Information

Click to search

BAC

Clone NameMSMg01-542J09
Chromosome8 (Build37)
Map Location 23,581,347 - 23,581,873
singlet/doubletsinglet
Overlap geneAI316807
Upstream geneLOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31
Downstream geneSlc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J09.T7 (MSMg01no542_j09.b1)MSMg01-542J09.TJ (MSMg01no542_j09.g1)
ACCAG608324AG608325
length781777
length of high quality
(start - end)		688 (46 - 733)563 (75 - 637)
definitionCHROMAT_FILE: MSMg01no542_j09.b1 PHD_FILE: MSMg01no542_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:40 2005CHROMAT_FILE: MSMg01no542_j09.g1 PHD_FILE: MSMg01no542_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTCTACTGAGCTGGCCTCAGATCTAGGCAGAAAGCAATTGGTT
ACCCCCATAGCACCCATGCCCTGATCGCCCATCCTGCCTGCGGGTCAGTA
TTGTGGTGTGCAGTGCCTAGCACTAACTATTAAGACCACTGGCGTGTTTT
CTCCCACGCGCGACCTGGGTACACCTCCTTTCACTATAAAAATGATCGCA
GGGAGGAAGTTTCCGGTCAGTTCCAGAATGATTTTCCCCTGTTCTATACC
TAGAGTGTGCAGTGTCTTCAGCAATAGAGTTTTACTATACAGATCAAATT
CCTGCGTTGCTTTGGGTGTCCCTGGGACCTTCTGAAACATTTCATTCTTA
CCCAGCGTTGAGATTTTCGTGACATAACCCATGTGCTCTGGAAGCAGCAT
TGTCCACTCATGCAGGGTACCTCCATTTTTAAAAAAAAATTAGCTGACAT
AGCAATGGGTTTCCATAAGAATTTTCACACAGCCTCAGTGCTAACTAACC
CACCCCACTCCTTCTCTCCCCTGTTATGTTGAACTCCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTCTCT
CTCTCTTTCTTTCTTTCTTTCTTTTTTTTGGTAACCAATTTATAAGTCAT
ANGAAAATGTACTGAGAAGTAATTCTGTGGT

CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTAAGACAACAAGTGGAGGCGCATC
CCGTTTGTAAGTGCATTCTGTGCCAAGTTGTAGACATAATGTGTTGAACG
CAGATTTTCTGTTGCACTTAGTTAACAAAAGGTTATAAAACATGGCTATT
TAGAAGAACTTACTTTTCCAACACAGATTTATCTCAACATCATGGCTGTT
TGATCCTTTGCCTTCCTGTTGTGTGAGGCCTCTCTGCGGCCTTGAGAGAT
GATCATACTCTTACAGGGTTTGCAGTGATGGAGACTGCAAACACCAGTCG
ATACCTCCATTTCTTCCTCCTCTTACTTCTCCCGCTTTGTGCTCACTTGG
GATGACATTGAAATGGTCAAACAACTGAACACCAAAGTAGTATACAAATG
GCTTTCAGGAACTCTGAGATCAAGGTGCAAGGCCAGAAGTTATATTTGAA
CAATATGAATACACCCTATGGTTCTAATCACTGGAAGAAATGGAAAATCT
GCCTCGTGTACACAGAACAAAGAAACAAACGTTAGGCAGTATAGGTCCAG
AATCAACTGTACATTGAAGCCTTTTGTGATATCTGAGAGATGAAGGCCTG
GCTTCCATGGCACATTAGGGAGGACAAGCAAGATGGTGTTCATCTTAGAA
CTCCAGGCTCATCTCAGCTGTCCAACTGATGGAGTTTAGAGTCACAAGGA
AACAGAGCTCTGGGCNAGTCCTGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j09.g1 MSMg01no542_j09.g1 CHROMAT_FILE:
MSMg01no542_j09.g1 PHD_FILE: MSMg01no542_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:40 2005
         (563 letters)



>mm_chr8_23581284_23582246
          Length = 963

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/527 (99%), Gaps = 4/527 (0%)
 Strand = Plus / Minus

                                                                       
Query: 41  attctgtgccaagttgtagacataatgtgttgaacgcagattttctgttgcacttagtta 100
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 attctgtgccaagttgtagacataatgtgttgaacgcagattttctgttgcacttagtta 531

                                                                       
Query: 101 acaaaaggttataaaacatggctatttagaagaacttacttttccaacacagatttatct 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acaaaaggttataaaacatggctatttagaagaacttacttttccaacacagatttatct 471

                                                                       
Query: 161 caacatcatggctgtttgatcctttgccttcctgttgtgtgaggcctctctgcggccttg 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 caacatcatggctgtttgatcctttgccttcctgttgtgtgaggcctctctgcggccttg 411

                                                                       
Query: 221 agagatgatcatactcttacagggtttgcagtgatggagactgcaaacaccagtcgatac 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agagatgatcatactcttacagggtttgcagtgatggagactgcaaacaccagtcgatac 351

                                                                       
Query: 281 ctccatttcttcctcctcttacttctcccgctttgtgctcacttgggatgacattgaaat 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctccatttcttcctcctcttacttctcccgctttgtgctcacttgggatgacattgaaat 291

                                                                       
Query: 341 ggtcaaacaactgaacaccaaagtagtatacaaatggctttcaggaactctgagatcaag 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggtcaaacaactgaacaccaaagtagtatacaaatggctttcaggaactctgagatcaag 231

                                                                       
Query: 401 gtgcaaggccagaagttatatttgaacaatatgaatacaccctatggttctaatcactgg 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtgcaaggccagaagttatatttgaacaatatgaatacaccctatggttctaatcactgg 171

                                                                       
Query: 461 aagaaatggaaaatctgcctcgtgtacacagaacaaagaaacaaacgttaggcagtatag 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aagaaatggaaaatctgcctcgtgtacacagaacaaagaaacaaacgttaggcagtatag 111

                                                          
Query: 521 gtccagaatcaa----ctgtacattgaagccttttgtgatatctgag 563
           ||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 110 gtccagaatcaactgtctgtacattgaagccttttgtgatatctgag 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |