Query= MSMg01no543_b21.b1 MSMg01no543_b21.b1 CHROMAT_FILE:
MSMg01no543_b21.b1 PHD_FILE: MSMg01no543_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:22 2005
(613 letters)
>mm_chr8_129887306_129888318
Length = 1013
Score = 1062 bits (549), Expect = 0.0
Identities = 591/611 (96%), Gaps = 10/611 (1%)
Strand = Plus / Plus
Query: 7 attcaaaagactcgagacaactgaatgctggctgccatgcaaagcccctgaaagcgctgt 66
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 207 attcaaaagactcgagacaactgaaagctggctgccatgcaaagcccctgaaagcgctgt 266
Query: 67 attagcctatctattctagaaaggtagtaattcctggagggcattccaaaggaagatgct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attagcctatctattctagaaaggtagtaattcctggagggcattccaaaggaagatgct 326
Query: 127 cacacaagtgtgagtaactggttgggggatgagagtcagtcatttgaatcacggtgtgtc 186
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 cacacaagtgtgagtaactggttgggagatgagagtcagtcatttgaatcacggtgtgtc 386
Query: 187 tgaagatgctgctgcaaagccttacatgggctccacagtctctctttgtcgtacatgttc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgaagatgctgctgcaaagccttacatgggctccacagtctctctttgtcgtacatgttc 446
Query: 247 tgaatctttcccagtgaagacagctgttcacttatatagcatccatagcacagcacagcc 306
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 447 tgaatctttcccagtgaagacagctgttcacttatatagcatccatagcactgcacagcc 506
Query: 307 tgcttccaggcgtctttcttcatgtagtactaaacattttttcatactacatttttggag 366
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 507 tgcttccaggcgtctttcttcatgtattactaaacattttttcatactacattt-----g 561
Query: 367 gggggggggtagtttgagacagggtttctctctatagccttgcctgtcctggagctcact 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gggggggggtagtttgagacagggtttctctctatagccttgcctgtcctggagctcact 621
Query: 427 ctgtagaccaggctgactgtaaactcccaagaggtccatctgtgtctgcctcctaagtgc 486
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctgtagaccaggctgactataaactcccaagaggtccatctgtgtctgcctcctaagtgc 681
Query: 487 taggactaaagaaaggcatgtgccaccaaccgactaaatttatttatgcaacttataatc 546
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgggactaaagaaaggcgtgtgccaccaaccgactaaatttatttatgcaacttataatc 741
Query: 547 agatgttggttaattttatttacgtaggntttttt-----ggntttgtttattataattt 601
|||||||||||||||||||||| ||||| |||||| || |||||||||||||||||
Sbjct: 742 agatgttggttaattttatttatgtagggtttttttttttggttttgtttattataattt 801
Query: 602 tattttacttt 612
|||||||||||
Sbjct: 802 tattttacttt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_b21.g1 MSMg01no543_b21.g1 CHROMAT_FILE:
MSMg01no543_b21.g1 PHD_FILE: MSMg01no543_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:22 2005
(587 letters)
>mm_chr8_130050811_130051798
Length = 988
Score = 948 bits (490), Expect = 0.0
Identities = 547/572 (95%), Gaps = 11/572 (1%)
Strand = Plus / Minus
Query: 1 aaggactgcctccactacacacttaattcaaaaccagggggatacatgtggtgctgtctc 60
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 650 aaggactgcctccactacatacttaattcaaaaccagggggctacatgtggtgctgtctc 591
Query: 61 agggaaaaaaaaaaaa-cactacaccaacagtattggataacaacaacagcaaaacctat 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agggaaaaaaaaaaaaccactacaccaacagtattggataacaacaacagcaaaacctat 531
Query: 120 ttaaataaggtacaaggtacatgcaaaaacataaggagaaataacacataaatcggaaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttaaataaggtacaaggtacatgcaaaaacataaggagaaataacacataaatcggaaac 471
Query: 180 aaatgaaaacctgtctctgaacaggccaaggattcttcgcagcaagaacgttatcttcag 239
|||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct: 470 aaatgaaaacttgtctctgaacaggccaagggttcttagcagcaagagtgttatcttcag 411
Query: 240 ggactagcgacaacacctttatacagaggcaagatttgggttttaactgaacacataatg 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggactagcaacaacacctttatacagaggcaagatttgggttttaactgaacacataatg 351
Query: 300 aaattgacttttgaggcatagttttgcatgataaacctataaagccattggccaaaaaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaattgacttttgaggcatagttttgcatgataaacctataaagccattggccaaaaaaa 291
Query: 360 ggcaactgtactatatgctaggaaatacagtgagattggagcgctagttcattaagaagc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 290 ggcaactgtactatatgctaggaaatacagtgagattggagcgctagttcattaaggagc 231
Query: 420 catagaaacataaggatctcagaacacaaataaattcaaagctcagagctagggaggcag 479
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 230 catagaaacataaggatctcagaaca----------caaagctcagagctagggaggcag 181
Query: 480 gataggtggatctgaagcacactggtcagctatcttatttacttggtgagtcccagagaa 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 180 gataggtggatctgaagcacactggtcagctatcttatttacttggtgaatcccagagaa 121
Query: 540 gtaaaaacatctgtttaaaaaacaaacaaaca 571
|| | || |||||||||||||||||||||||
Sbjct: 120 gtgagaatgtctgtttaaaaaacaaacaaaca 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
