Query= MSMg01no543_c09.b1 MSMg01no543_c09.b1 CHROMAT_FILE:
MSMg01no543_c09.b1 PHD_FILE: MSMg01no543_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:25 2005
(240 letters)
>mm_chr8_61300594_61301233
Length = 640
Score = 424 bits (219), Expect = e-123
Identities = 233/239 (97%), Gaps = 4/239 (1%)
Strand = Plus / Plus
Query: 4 ggaattcattctgttcca--tgtatatcaaatgattttttccctatggagtttctcttag 61
||||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattcattctgg--caaatgtatatcaaatgattttttccctatggagtttcccttag 261
Query: 62 tgtatgtccataatcttctatgaaacagcctatatgtcctgctctgtaacttaacacttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgtatgtccataatcttctatgaaacagcctatatgtcctgctctgtaacttaacacttt 321
Query: 122 cttggttttatacattgtcaaataactccagagtatgtcaaaataatgactcatgaaggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttggttttatacattgtcaaataactccagagtatgtcaaaataatgactcatgaaggc 381
Query: 182 aactgtaatgtgatgatgtttttgtatttatagatctcaaaaagtaaaacataactgaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aactgtaatgtgatgatgtttttgtatttatagatctcaaaaagtaaaacataactgaa 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no543_c09.g1 MSMg01no543_c09.g1 CHROMAT_FILE:
MSMg01no543_c09.g1 PHD_FILE: MSMg01no543_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:25 2005
(590 letters)
>mm_chr8_61464218_61465223
Length = 1006
Score = 868 bits (449), Expect = 0.0
Identities = 566/629 (89%), Gaps = 47/629 (7%)
Strand = Plus / Minus
Query: 1 aagaagagaataaaatatcttaaacctgaaagcagggcattcttttgtg----gggagag 56
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 678 aagaagagaataaaatatattaaacctgaaagcagggcattcttttgtgggaagggagag 619
Query: 57 gaccaataaaagatgg----aaagttagatctgggaggacagagtgtgtc-------aaa 105
|||||||||||||||| ||| |||||||||||||||||| |||||| |||
Sbjct: 618 gaccaataaaagatggaaaaaaa--tagatctgggaggacagaatgtgtcaaaaaaaaaa 561
Query: 106 aaaaaacagtgtcccataattaatagaac---aaaaatataacaatgaaaccc-atacct 161
||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct: 560 aaaaaactgtgtcccataattaatagaacaaaaaaaatgtaacaatgaaacccaatacct 501
Query: 162 tg----c--aaaacaacaacaatgatgatgattatgaagttagctttatatcacaactta 215
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgtactaaaaacaacaacaatgatgatgattatgaagttagctttatatcacaactta 441
Query: 216 aggacaaatttcacaaatg------atggaggacttgttgaacatgcacaagatcccaag 269
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 440 aggacaaatttcacaaatgatggaaatggaggatttgttgaacatgcacaagatcccaag 381
Query: 270 actttgtaattttgattctgtccccattacaaaaagtgaattgatttagaactgcagtaa 329
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 actttgtaattttgattctgtccccatcacaaaaagtgaattgatttagaactgcagtaa 321
Query: 330 tcaaaacaaatatatctatatctagcattttttctttagaaaaggaatgtaatagcatgg 389
|||||||||| ||||||||||||||||||||||| |||||| ||||||||| |||
Sbjct: 320 tcaaaacaaa------tatatctagcattttttctttaggaaaggattgtaatagcgtgg 267
Query: 390 gatgcatatgagagagcaggagatttccaatagagcacaaagaatcattgtac------- 442
||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 266 gatgcatatgagagagcagcagatttccaatagagcacaaagaatcattttacaaaaaaa 207
Query: 443 -aaaaaaaaagcagaaataaggaaaacttgaagtctgaaaatttctgacaatgtctgagt 501
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 206 aaaaaaaaaagcagaaataaggaaaacttgaagtctgaaaatttctgaaaatatctgagt 147
Query: 502 tatataatagaccaagaatattcagtcaattctggttatagaatcaataaacattaaatt 561
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 146 tatataatagaccaagaatattcagtcaattcttgttttagaatcaataaacattaaatt 87
Query: 562 ctagataagtcattgaaaaatgaacactg 590
||||| |||||||||||||||||||||||
Sbjct: 86 ctagacaagtcattgaaaaatgaacactg 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 1006
Length adjustment: 10
Effective length of query: 580
Effective length of database: 996
Effective search space: 577680
Effective search space used: 577680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
