Query= MSMg01no543_i12.b1 MSMg01no543_i12.b1 CHROMAT_FILE:
MSMg01no543_i12.b1 PHD_FILE: MSMg01no543_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:56 2005
(594 letters)
>mm_chr8_52558616_52559609
Length = 994
Score = 1044 bits (540), Expect = 0.0
Identities = 576/590 (97%), Gaps = 5/590 (0%)
Strand = Plus / Plus
Query: 5 gaattcacccctgacttattgatgtccttctaatttattcttgtacttctctacaactga 64
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 205 gaattcacccctgacttattgatgtccttctaatatattcttgtacttctttacaactga 264
Query: 65 ctttagatcacatctttattttaactcatcctattaagtaaaggtgtttatagctttcct 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 ctttagatcacatctttattttaactcatcctgttaagtaaaggtgtttatagctttcct 324
Query: 125 aaaaacaaaagattatgatagaggaaaagactattatagaagaaaagactatgatagagg 184
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 325 aaaaacaaaatattatgatagaggaaaagactattatagaagaaaaggctatggtagagg 384
Query: 185 aattcaggtcaacaaattttacataacaagacctactgtataacaacccaaaatgaaaag 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattcaggtcaacaagttttacataacaagacctactgtataacaacccaaaatgaaaag 444
Query: 245 aaaggaaccaatatcaaattttaaatccaaacaaacaaaacatgaattaacaacatacaa 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaggaacaaatatcaaattttaaatccaaacaaacaaaacatgaattaacaacatacaa 504
Query: 305 acagataaataaataaataaataaataaataaataaataaataaataaataaataaatac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 acagataaataaataaataaataaataaataaataaataaataaataaataaata----c 560
Query: 365 acaaaacttccactctacctttcttgctatttctctgctttggaaactattttcccttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaaacttccactctacctttcttgctatttctctgctttggaaactattttcccttga 620
Query: 425 gtgtaagcactggcattgcatttggcttctctcctgaccagaggtccactttaagtttga 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gtgtaagcactggcattgcatttggcttctctcctgaccagaggtccactctaagtttga 680
Query: 485 atcacattgattgtatctcttattcatcattttgcctttaagatgcagctcacacatatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcacattgattgtatctcttattcatcattttgcctttaagatgcagctcacacatatt 740
Query: 545 tgtatgaacaagacaggcataactagaaactctatttttttttctttcta 594
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 tgtatgaacaagacaggcataactagaaactctatttttttt-ctttcta 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_i12.g1 MSMg01no543_i12.g1 CHROMAT_FILE:
MSMg01no543_i12.g1 PHD_FILE: MSMg01no543_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:56 2005
(457 letters)
>mm_chr8_52742896_52743752
Length = 857
Score = 685 bits (354), Expect = 0.0
Identities = 363/366 (99%)
Strand = Plus / Minus
Query: 1 caaaagaaacaaaggacaatgtcttatctaaaattttagaaatctatttggtagattcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caaaagaaacaaaggacaatgtcttatctaaaattttagaaatctatttggtagattcca 307
Query: 61 aaagccaaaagccatcaccccccttttaaatctaggtagcatacatgatgtaaaagttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaagccaaaagccatcaccccccttttaaatctaggtagcatacatgatgtaaaagttaa 247
Query: 121 gccatcttcagtagtccatgattggctctatctctgatgttcaggttgggaagtataaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gccatcttcagtagtccatgattggctctatctctgatgttcaggttgggaagtataaag 187
Query: 181 ggaaaggggaaagagggggaagtggggatagtccacatccagccagagtttctcctgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggaaaggggaaagagggggaagtggggatagtccacatccagccagagtttctcctgtgc 127
Query: 241 tctggttaagcagacatgggaaggctgacagatgctttccactcggcttcgggtgggcat 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 126 tctggttaagcagacatgggaaggctgacagatgctttccactcggcttcaggtgggcat 67
Query: 301 ctaagccactgaccccactcgacaaggggaggacaaggggcagcccccaacctggatggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66 ctaagccactgaccccactcgacaaggggaggacaaggggcagcccccaacctgggtggg 7
Query: 361 gtaaca 366
| ||||
Sbjct: 6 gcaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
