Query= MSMg01no543_k17.b1 MSMg01no543_k17.b1 CHROMAT_FILE:
MSMg01no543_k17.b1 PHD_FILE: MSMg01no543_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:07 2005
(718 letters)
>mm_chr8_64198918_64200035
Length = 1118
Score = 1371 bits (709), Expect = 0.0
Identities = 712/713 (99%)
Strand = Plus / Plus
Query: 6 gaattcagtgcactccaagaagtttgttgttattgttgttgttgttgttggttttctagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagtgcactccaagaagtttgttgttattgttgttgttgttgttggttttctagg 265
Query: 66 atcagtaaggcttaacccatgtaacaactgtgccatttgcttttggaaaattgtatacag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atcagtaaggcttaacccatgtaacaactgtgccatttgcttttggaaaattgtatacag 325
Query: 126 aggatgcaaggatgcctgaagaaaataaccagaagaccattcacactttgcccctccaca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggatgcaaggatgcctgaagaaaataaccagaagaccattcacactttgcccctccaca 385
Query: 186 gcctccttaccttcaatgaacacctctgcagatgtgctgtctgagccactggggtttgta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcctccttaccttcaatgaacacctctgcagatgtgctgtctgagccactggggtttgta 445
Query: 246 gccagacacgtgtagcgacctgtgtcgtcctcaaaggcctcagcaatgaccaaggtgtgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gccagacacgtgtagcgacctgtgtcgtcctcaaaggcctcagcaatgaccaaggtgtgc 505
Query: 306 agctccccactctcgcagtggatctgaacgtcaggactgttgtacagctccttcccctca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agctccccactctcgcagtggatctgaacgtcaggactgttgtacagctccttcccctca 565
Query: 366 cagaaccatctgtgggacaagcggaggacacagatgacagaggaatgagtgaggtagagg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagaaccatctgtgggacaagcggaggacacagatgacagaggaatgagtgaggtagagg 625
Query: 426 cggcatgctaagcaaggctcatactaggctagaagatgtttgcttgacaaaagatctgtt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cggcatgctaagcaaggctcatactaggctagaagatgtttgcttgacaaaagatctgtt 685
Query: 486 tcagtgttactcatggaaactgaacctagactgtgaaattaatgactagacatacttagc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcagtgttactcatggaaactgaacctagactgtgaaattaatgactagacatacttagc 745
Query: 546 ccacaaaggatttctttgcaaagcatcttgcacattttagtaaccttgaattaagcgacc 605
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 746 ccacaaaggatttctttgcaaagcatcttgcacattttaataaccttgaattaagcgacc 805
Query: 606 tcattgaacttgtgaagaccttttggtaacaaaattaagggactaaaacatcaaagtgtc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tcattgaacttgtgaagaccttttggtaacaaaattaagggactaaaacatcaaagtgtc 865
Query: 666 ttaacaacatgttttataatgaaagattcccatgattgttataattttaccta 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttaacaacatgttttataatgaaagattcccatgattgttataattttaccta 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space: 784464
Effective search space used: 784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_k17.g1 MSMg01no543_k17.g1 CHROMAT_FILE:
MSMg01no543_k17.g1 PHD_FILE: MSMg01no543_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:07 2005
(586 letters)
>mm_chr8_64378949_64379933
Length = 985
Score = 922 bits (477), Expect = 0.0
Identities = 569/621 (91%), Gaps = 40/621 (6%)
Strand = Plus / Minus
Query: 1 agcacagttattcccagaggattcaatataaagatgataagatgaaaagggtaccagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agcacagttattcccagaggattcaatataaagatgataagatgaaaagggtaccagggg 727
Query: 61 aaaaaaaaccctcaagtcctcctcattaaaccatttattgctgtgtggggcctgaatgaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 726 -aaaaaaaccctcaagtcctcctcactaaaccatttattgctgtgtggggactgaatgaa 668
Query: 121 ctgccagc--------------tttagataaagtgttttactttgggaggatgtattgtg 166
|||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctgctagcttccgttcccaaaatttagataaagtgttttactttgggaggatgtattgtg 608
Query: 167 tttaaaaccacagggtaaacttgagataacttttcacaatggca---------atgtatc 217
|||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct: 607 tttaaaaccacagggtaaacttgagatacctt---acaatggcaatgtatctgatgtatc 551
Query: 218 tgatgatcaaaaagaaaaggggcttgtgtgtctattaagcaatggttatataactaaagt 277
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 550 tgatgatcaaaaagaaaaggagcttgtgtgtctgttaagcaatggttatataactaaagt 491
Query: 278 catttttgcatcaaacataggattttgtgaatgttttcacctttggctgttgccctacag 337
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ca-ttttgcatcaaacataggattttgtgaatgttttcacctttggctgttgccctacag 432
Query: 338 ggttctttataacaacaac---------aaaaatcaatcactgaaacgagagagaaa--a 386
||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct: 431 ggttctttataacaacaacaacaacaaaaaaaatcaatcactgaaatgagagagaaaaga 372
Query: 387 gagcttaaaaagaaaaggaagaaggaaataagaagcaagaaactagtctaaagctagcca 446
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 371 gagcttaaaaagaaaaggaagaaggaaataagaagcaagaaattagtctaaagctagcca 312
Query: 447 tgattcgaaaacaacaacaaaaacaacaac-aaaaacttcagagcctctgttcttggctt 505
|||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct: 311 tgattctaaaacaacaacaacaacaacaacaaaaaactccagagcctctgttcttggctt 252
Query: 506 taaccttcatagatagattttctgcagtattgaatttcagcaatattgaatggtttaatc 565
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaccttcgtagatagattttctgcagtattgaatttcagcaatattgaatggtttaatc 192
Query: 566 aaaagtgtttattccttttgt 586
|||||||||||||||||||||
Sbjct: 191 aaaagtgtttattccttttgt 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
