BAC Information

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BAC

Clone NameMSMg01-543K24
Chromosome8 (Build37)
Map Location 83,243,062 - 83,414,739
singlet/doubletdoublet
Overlap geneSmarca5, Gab1, LOC666237, LOC100039496
Upstream geneAnapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3
Downstream geneLOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543K24.T7 (MSMg01no543_k24.b1)MSMg01-543K24.TJ (MSMg01no543_k24.g1)
ACCAG609164AG609165
length744755
length of high quality
(start - end)		694 (51 - 744)652 (82 - 733)
definitionCHROMAT_FILE: MSMg01no543_k24.b1 PHD_FILE: MSMg01no543_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:08 2005CHROMAT_FILE: MSMg01no543_k24.g1 PHD_FILE: MSMg01no543_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(83,414,161 - 83,414,739)(83,243,062 - 83,243,713)
sequence
NNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGATTGTGTGCTGGAAGTTTTCTTCAGACTCTGAGGTGA
GTGGCTCCTTTCTTTTTCATGTCCCCACAATTTCCCTGTAATCTCTTCTG
CCTCAGTTATCTTATTCTTTACCAAAGATGTTTTAGTCTCTCAAGGTCCT
TTCTATTCAGAATCCCTCTGTACATTTTTGAGGGCAGGACTGTGTTTGAG
ATGGCTGGTGTAATGATCGAGAATATCTTAAACTTATGGATTGATCTCGG
AAGAAATTGGTAACTTGGTAATGCATTTTGATTCACAAACTCTATATTTC
TTACTAGATTCTTCTTTAAATTTAAATTTAAATTCTCTAAGCAATACCTC
TCTAATATAAATATATGAATTTATAGCTGTGTATTGGCCTGTTTTTTGTG
TCAACTTGACACAAGCTAGAATCATCAGAAAGGCAAGATGAAAATGCCTC
CATGAGGTCCAGCATTATGGCTTTTTCTTAGTGATCAAGGTGAGAGGGCC
CAGCCCATGATGGTGGTGCTGTCCCTGGGCTGGTGGTCCTGGGTTCTGTA
AGGAAGCAGGCTGAGCAAGCCATGGAGAGCAAACCAGTAAGTAGCACCCC
TCCATGACCTCTGCATCAGCTCCTGCCTCCAGGTTGCAGCCCTGCATGAG
CTCCTGTCCTGACTTCCTCCAATGATGGACTATTATCTGGAAGT

NNNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATACTGTAAGTAGAAA
TACTTTTGAGTACATGTAAATAATATTTAAGTAAATATTTTTAAATTCAT
AAAAGAAAATAACAGGAACACAACATCACTGTCTAACAAAGTATCTGGGA
AAGGTGTATGTAGGAAAGGCATTCCTGGTATCTTATGAAAAAGATGAAAT
TTCTAGGAAACCTACATGAAGTTAAAATGGTCGCTACTCTGCATGTTTAT
CATTTTCTATAAGAATTTAAGCCTAAAATTAAGGGAAGAGGATTTGGCTG
AAATTTTTAGATCTTTTTAAACATTTAACATTTCAACTTTAAAAACTGTT
AGAATAGACATTTCAAAATGTTGTGTTTCATCCTCTTAATTCTAGAATTT
TTAAAGTCTTCATTACTTTACAATTAAACGCCAGTAATATAGATACCTTG
TTCTTTCAGTTTAGGGAGTAGCTTGTCTAACACCACCATCTTGCCACTGT
TGGTAACTAGATGCATATCTGTTGTGTACGGTGGACCAGGTTCAGCTCCA
TCGAAGAGATAAGGATGATTGCAGCATTTCCTCAACTGCATCAAAATGTT
CAATAGCCTCATTTTGTCCATCTTCCCTGCTGAGTTTAATATGTCTATAT
CTTTCATTAATATCCGAGTATACCTATTAAAAAGAAAAATTGTTTAATAT
GCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_k24.b1 MSMg01no543_k24.b1 CHROMAT_FILE:
MSMg01no543_k24.b1 PHD_FILE: MSMg01no543_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:08 2005
         (694 letters)



>mm_chr8_83414161_83415254
          Length = 1094

 Score = 1120 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgattgtgtgctggaagttttcttcagactctgaggtgagtggctcctttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattcttgattgtgtgctggaagttttcttcagactctgaggtgagtggctcctttctt 520

                                                                       
Query: 65  tttcatgtccccacaatttccctgtaatctcttctgcctcagttatcttattctttacca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tttcatgtccccacaatttccctgtaatctcttctgcctcagttatcttattctttacca 460

                                                                       
Query: 125 aagatgttttagtctctcaaggtcctttctattcagaatccctctgtacatttttgaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aagatgttttagtctctcaaggtcctttctattcagaatccctctgtacatttttgaggg 400

                                                                       
Query: 185 caggactgtgtttgagatggctggtgtaatgatcgagaatatcttaaacttatggattga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caggactgtgtttgagatggctggtgtaatgatcgagaatatcttaaacttatggattga 340

                                                                       
Query: 245 tctcggaagaaattggtaacttggtaatgcattttgattcacaaactctatatttcttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tctcggaagaaattggtaacttggtaatgcattttgattcacaaactctatatttcttac 280

                                                                       
Query: 305 tagattcttctttaaatttaaatttaaattctctaagcaatacctctctaatataaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tagattcttctttaaatttaaatttaaattctctaagcaatacctctctaatataaatat 220

                                                                       
Query: 365 atgaatttatagctgtgtattggcctgttttttgtgtcaacttgacacaagctagaatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atgaatttatagctgtgtattggcctgttttttgtgtcaacttgacacaagctagaatca 160

                                                                       
Query: 425 tcagaaaggcaagatgaaaatgcctccatgaggtccagcattatggctttttcttagtga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tcagaaaggcaagatgaaaatgcctccatgaggtccagcattatggctttttcttagtga 100

                                                                       
Query: 485 tcaaggtgagagggcccagcccatgatggtggtgctgtccctgggctggtggtcctgggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tcaaggtgagagggcccagcccatgatggtggtgctgtccctgggctggtggtcctgggt 40

                                                  
Query: 545 tctgtaaggaagcaggctgagcaagccatggagagcaaa 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  tctgtaaggaagcaggctgagcaagccatggagagcaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_k24.g1 MSMg01no543_k24.g1 CHROMAT_FILE:
MSMg01no543_k24.g1 PHD_FILE: MSMg01no543_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:08 2005
         (652 letters)



>mm_chr8_83242862_83243913
          Length = 1052

 Score = 1253 bits (648), Expect = 0.0
 Identities = 651/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatactgtaagtagaaatacttttgagtacatgtaaataatatttaagtaaatatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatactgtaagtagaaatacttttgagtacatgtaaataatatttaagtaaatatttt 260

                                                                       
Query: 61  taaattcataaaagaaaataacaggaacacaacatcactgtctaacaaagtatctgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaattcataaaagaaaataacaggaacacaacatcactgtctaacaaagtatctgggaa 320

                                                                       
Query: 121 aggtgtatgtaggaaaggcattcctggtatcttatgaaaaagatgaaatttctaggaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgtatgtaggaaaggcattcctggtatcttatgaaaaagatgaaatttctaggaaac 380

                                                                       
Query: 181 ctacatgaagttaaaatggtcgctactctgcatgtttatcattttctataagaatttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacatgaagttaaaatggtcgctactctgcatgtttatcattttctataagaatttaag 440

                                                                       
Query: 241 cctaaaattaagggaagaggatttggctgaaatttttagatctttttaaacatttaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaaaattaagggaagaggatttggctgaaatttttagatctttttaaacatttaacat 500

                                                                       
Query: 301 ttcaactttaaaaactgttagaatagacatttcaaaatgttgtgtttcatcctcttaatt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ttcaactttaaaaactgttagaatagacatttcaaaatgttgtatttcatcctcttaatt 560

                                                                       
Query: 361 ctagaatttttaaagtcttcattactttacaattaaacgccagtaatatagataccttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagaatttttaaagtcttcattactttacaattaaacgccagtaatatagataccttgt 620

                                                                       
Query: 421 tctttcagtttagggagtagcttgtctaacaccaccatcttgccactgttggtaactaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttcagtttagggagtagcttgtctaacaccaccatcttgccactgttggtaactaga 680

                                                                       
Query: 481 tgcatatctgttgtgtacggtggaccaggttcagctccatcgaagagataaggatgattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcatatctgttgtgtacggtggaccaggttcagctccatcgaagagataaggatgattg 740

                                                                       
Query: 541 cagcatttcctcaactgcatcaaaatgttcaatagcctcattttgtccatcttccctgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagcatttcctcaactgcatcaaaatgttcaatagcctcattttgtccatcttccctgct 800

                                                               
Query: 601 gagtttaatatgtctatatctttcattaatatccgagtatacctattaaaaa 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagtttaatatgtctatatctttcattaatatccgagtatacctattaaaaa 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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