BAC Information

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BAC

Clone NameMSMg01-543L12
Chromosome8 (Build37)
Map Location 124,686,091 - 124,837,110
singlet/doubletdoublet
Overlap geneGm22, Zfpm1
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
Downstream geneTrhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543L12.T7 (MSMg01no543_l12.b1)MSMg01-543L12.TJ (MSMg01no543_l12.g1)
ACCAG609188AG609189
length752753
length of high quality
(start - end)
552 (48 - 599)530 (74 - 603)
definitionCHROMAT_FILE: MSMg01no543_l12.b1 PHD_FILE: MSMg01no543_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:10 2005CHROMAT_FILE: MSMg01no543_l12.g1 PHD_FILE: MSMg01no543_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,836,563 - 124,837,110)(124,686,091 - 124,686,620)
sequence
CCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGGCTTATGTGTGGCTTGGAGGTGAAGTGCTTTCCTGGCTAG
CTTGAGAGCTGGGATCCCATCCCCAGCACCACAAGACAAGGCTGTGAGGG
CTGGTTGTCCACAAGGTCTATGGCTCATAACCTGGACCCTGACTGTCTGT
GCCCTGAGCTCTTACCCCCGTGTCCCCTCCCCCCATTACCATAGCCCTAA
GGCTCCATTATGCCATGACCCCAGTGCCTCAGGACCTCTGCACACCCAGC
TCCTTGCCTGAATACCTCCCTGTATCCTAATGTGCCTTTCAGCCGTCAGC
CTAGAGATGGGGTCCTCTCTAGTGCTGCCCCTTGCTCTCCCACTTGGCCT
TGACACCCTGTCACCCCCTGTGCTGGCTGACACTGTTCAGGGACATACTG
GCCTGATCCAGGGCCAGGCTTCTTGGCCCTGCCTCTAGGAGTTGGGATGG
GCTGATTGGCTCTTGCTCAGATCATAGCAGCTCCTGGAAAGAGTTCTGGG
CTCCAAGAAACTCCTGGGCGGAAGAGACAACAGTTCTTCCCGCCCTAGCT
GGGCTCCCTCACGCCAGGACTGTGGTGTCAGCCAGGAGCCTTGGTTTCAA
CTGTCAGGAGCCACAGGGCTCCCCTTCTCTGCTCTGCTTTGTCTGAGGAG
CTTGGAGGTGGCAGACTTACAGGTCCTAACTCTTCCTAAAGGTCATGTGC
TC
TCAATACAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCATCTATTCAGGGCCCTGACAAAGTTCT
CCGGTAAATGACCTAGAAGACAGCACAGGCTGAGCTTCAATCAATGTCAC
TCACGCCAGAAGCTGCAGGTGGCACAAGTAACATCTGCCATTCACTCTGA
GGCAATGACAGTCAAAGATGATGGAGAGATGGCAGGATGGAGAGGTAGCT
GCCTGTCAAAGGAGGGGGCAGAGCTACTGTGTGTGGTCATGAGACTAGTG
GGGGTGGCCCTGGGGTTTACCATGTGTCTGCATCTTCTGTTAGGATGTTC
TCCTGGTCAGATAACTGGAGAACAATTTCAGTGGCCTGTGGTACCTGCCA
GGTGATTTTCTGGGCCTCTCTGGCATGGTGGAGTGGATGAGGCTAAGGGC
CTAGAACTCCAAGATGAAACTTGAGTCTGTAAGAGGGGGGAGCAGAAAGA
GCCTGATGGTAGGGGTGCAGAAGGAGTGGAGACTCTGGACTCTGAGTTCT
TATGGAAGAAGGCTTGCTTCCAGAGATGGCTCAGATGTCTTTGGCTGATT
GTGAATGGTATGTGCTCCTGCTTGGAGGGAAGGGGGTTCCCCCTTGGTTT
GCTGAGCTTGCTCATAGTCCCCATGCCAGGCTCTGAACCCTACAGGGAGG
GTGAGTCTGGAACCCTCTTGAGGGCTGGCTCTGCCCCCCATGAGACCAGG
GGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_l12.b1 MSMg01no543_l12.b1 CHROMAT_FILE:
MSMg01no543_l12.b1 PHD_FILE: MSMg01no543_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:10 2005
         (552 letters)



>mm_chr8_124836271_124837222
          Length = 952

 Score =  990 bits (512), Expect = 0.0
 Identities = 539/548 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgggcttatgtgtggcttggaggtgaagtgctttcctggctagcttgagagctg 64
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gaattctgggcctcggtgtggcttggaggtgaagtgctttcctggctagcttgagagctg 781

                                                                       
Query: 65  ggatcccatccccagcaccacaagacaaggctgtgagggctggttgtccacaaggtctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggatcccatccccagcaccacaagacaaggctgtgagggctggttgtccacaaggtctat 721

                                                                       
Query: 125 ggctcataacctggaccctgactgtctgtgccctgagctcttacccccgtgtcccctccc 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 720 ggctcataacctggaccctgactgtctgtgccctgaactcttacccccgtgtcccctccc 661

                                                                       
Query: 185 cccattaccatagccctaaggctccattatgccatgaccccagtgcctcaggacctctgc 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cccattaccataaccctaaggctccattatgccatgaccccagtgcctcaggacctctgc 601

                                                                       
Query: 245 acacccagctccttgcctgaatacctccctgtatcctaatgtgcctttcagccgtcagcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acacccagctccttgcctgaatacctccctgtatcctaatgtgcctttcagccgtcagcc 541

                                                                       
Query: 305 tagagatggggtcctctctagtgctgccccttgctctcccacttggccttgacaccctgt 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 540 tagagatggggtcctctccagtgctgccccttgctctcccacttggccttgacaccctgg 481

                                                                       
Query: 365 caccccctgtgctggctgacactgttcagggacatactggcctgatccagggccaggctt 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caccccctgtactggctgacactgttcagggacatactggcctgatccagggccaggctt 421

                                                                       
Query: 425 cttggccctgcctctaggagttgggatgggctgattggctcttgctcagatcatagcagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cttggccctgcctctaggagttgggatgggctgattggctcttgctcagatcatagcagc 361

                                                                       
Query: 485 tcctggaaagagttctgggctccaagaaactcctgggcggaagagacaacagttcttccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcctggaaagagttctgggctccaagaaactcctgggcggaagagacaacagttcttccc 301

                   
Query: 545 gccctagc 552
            |||||||
Sbjct: 300 accctagc 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no543_l12.g1 MSMg01no543_l12.g1 CHROMAT_FILE:
MSMg01no543_l12.g1 PHD_FILE: MSMg01no543_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:10 2005
         (530 letters)



>mm_chr8_124685891_124686820
          Length = 930

 Score =  978 bits (506), Expect = 0.0
 Identities = 524/530 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctattcagggccctgacaaagttctccggtaaatgacctagaagacagcacaggctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctattcagggccctgacaaagttctccggtaaatgacctagaagacagcacaggctga 260

                                                                       
Query: 61  gcttcaatcaatgtcactcacgccagaagctgcaggtggcacaagtaacatctgccattc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcaatcaatgtcactcacgccagaggctgcaggtggcacaagtaacatctgccattc 320

                                                                       
Query: 121 actctgaggcaatgacagtcaaagatgatggagagatggcaggatggagaggtagctgcc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctgaggcgatgacagtcaaagatgatggagagatggcaggatggagaggtagctgcc 380

                                                                       
Query: 181 tgtcaaaggagggggcagagctactgtgtgtggtcatgagactagtgggggtggccctgg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcaaaggagggggcggagctactgtgtgtggtcatgagactagtgggggtggccctgg 440

                                                                       
Query: 241 ggtttaccatgtgtctgcatcttctgttaggatgttctcctggtcagataactggagaac 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttaccatgcgcctgcatcttctgttaggatgttctcctggtcagataactggagaac 500

                                                                       
Query: 301 aatttcagtggcctgtggtacctgccaggtgattttctgggcctctctggcatggtggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aatttcagtggcctgtggtacctgccaggtgattttctgggcctctccggcatggtggag 560

                                                                       
Query: 361 tggatgaggctaagggcctagaactccaagatgaaacttgagtctgtaagaggggggagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggatgaggctaagggcctagaactccaagatgaaacttgagtctgtaagaggggggagc 620

                                                                       
Query: 421 agaaagagcctgatggtaggggtgcagaaggagtggagactctggactctgagttcttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaagagcctgatggtaggggtgcagaaggagtggagactctggactctgagttcttat 680

                                                             
Query: 481 ggaagaaggcttgcttccagagatggctcagatgtctttggctgattgtg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagaaggcttgcttccagagatggctcagatgtctttggctgattgtg 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)