TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCCTGAGCACCATATTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTTCTTTATATATATT
GGATATTAGTCCTCAATCTGATTTAGGATAGGTAAAGATCCTTTCCCAAT
CTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAG
CTTTGCAGTTTCATGAGGTCTCATTTGTCAATTCTCGATCTTACAGCACA
AGCCATTGCTGTTCTATTCAGGAATTTTCCCCCTGTGCCCATATCTTCTA
GGCTTTTCCCCACTTTCTCCTCTATACGTTTCAGTGTCTCTGGCTTTATG
TGGAGCTCCTTGATCCACTTAGATTTGAGCTTAGTACAAGGAGATAGGAA
TGGATCAATTCCCATTCTTCTACATGATAACCACCAGTTGTGCCAACACC
ATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTG
TCGAAGATAAAGTGACCATAGGTGTGTGGGTTCATTTCTAGGTCTTCAAT
TCTATTCCATTGGTCTACTTTTTTGTCACTATACCAGTACCATGCAGGTT
TTATGACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCA
CCAGAAGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTT
GTTATGCC

NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGATACTGAGTGAGAATACAGG
GATACTGAGTGAGAATACAGGGATACTGAGTGAGAATACAGGGATACTGA
GTGAGAAGCTAATTCACAAATACAGAAAAGACCCATTTTAGAGATTAGCA
GCTCATTATCCCAGGAACAAAAAAGAGAAGAGCTGAAAGAAATTAGAAAT
ATATTACATTAGTAATATATTTCTATAATATTCATCCTGTGATATGAAGG
TCATGTGATTGACAGAAGCATAAGCCATGAATTCAACTTTCAGCACCTCA
GATTAAATGAAAAAACACCAAATCCTGCTTCTTTTTTTTTTTTTTAGAAA
AAACCTCCTTGACTACAATTAATGTTTCAGCCCAGACTTGTATATTTCGG
CGTTCATCCTTTCACAAACCAGTGTTTATTTGATGAAATGTAACAAAAGT
GTAGTCACATTCACTGTTACTTCAGCACATACTTTTTGAACATTCATCAT
ATTTATATTAATTGATTATGGTGACACTAATAAGACAAGAAACATTCAAA
GACTAATTTGGCAGGGATGCAGTAAAAGAGATTTATTGCTTATTGCCTTA
TGACATTTTCCATTTTATCCAGTTTAGAGTGAAAACCATTCATGATTTTG
GCAGAGGTATAGGTCAACTTTTCTTGCTACTAGATGATTATTCTTAATT

Query= MSMg01no543_n16.g1 MSMg01no543_n16.g1 CHROMAT_FILE:
MSMg01no543_n16.g1 PHD_FILE: MSMg01no543_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:20 2005
         (604 letters)



>mm_chr8_31232851_31233854
          Length = 1004

 Score = 1168 bits (604), Expect = 0.0
 Identities = 604/604 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggatactgagtgagaatacagggatactgagtgagaatacagggatactgagtgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggatactgagtgagaatacagggatactgagtgagaatacagggatactgagtgagaa 260

                                                                       
Query: 61  tacagggatactgagtgagaagctaattcacaaatacagaaaagacccattttagagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagggatactgagtgagaagctaattcacaaatacagaaaagacccattttagagatt 320

                                                                       
Query: 121 agcagctcattatcccaggaacaaaaaagagaagagctgaaagaaattagaaatatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagctcattatcccaggaacaaaaaagagaagagctgaaagaaattagaaatatatta 380

                                                                       
Query: 181 cattagtaatatatttctataatattcatcctgtgatatgaaggtcatgtgattgacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattagtaatatatttctataatattcatcctgtgatatgaaggtcatgtgattgacaga 440

                                                                       
Query: 241 agcataagccatgaattcaactttcagcacctcagattaaatgaaaaaacaccaaatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcataagccatgaattcaactttcagcacctcagattaaatgaaaaaacaccaaatcct 500

                                                                       
Query: 301 gcttcttttttttttttttagaaaaaacctccttgactacaattaatgtttcagcccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttcttttttttttttttagaaaaaacctccttgactacaattaatgtttcagcccaga 560

                                                                       
Query: 361 cttgtatatttcggcgttcatcctttcacaaaccagtgtttatttgatgaaatgtaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtatatttcggcgttcatcctttcacaaaccagtgtttatttgatgaaatgtaacaa 620

                                                                       
Query: 421 aagtgtagtcacattcactgttacttcagcacatactttttgaacattcatcatatttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgtagtcacattcactgttacttcagcacatactttttgaacattcatcatatttat 680

                                                                       
Query: 481 attaattgattatggtgacactaataagacaagaaacattcaaagactaatttggcaggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attaattgattatggtgacactaataagacaagaaacattcaaagactaatttggcaggg 740

                                                                       
Query: 541 atgcagtaaaagagatttattgcttattgccttatgacattttccattttatccagttta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgcagtaaaagagatttattgcttattgccttatgacattttccattttatccagttta 800

               
Query: 601 gagt 604
           ||||
Sbjct: 801 gagt 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)