TTTTNTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTTCCTCTCGTATCCTATTGGGGTCACTTTTTGTG
AATGTTCTTCACTGCAACTATACTGGTTCTCTATGGCTGCCTCCATGAAG
TATCATGAAGTCAGGTGGTCAGAAACCATGCAGAGTTCTTATTTTATAGA
TCATAATCTCACTGTCTGAAGTCAAGTTGTAAGGAGGGCTAGTCTTGTGT
TCTCTGGAGGTTCTAGAGGAGGAACCTTCCTTGCCTCCCCCTAGGTTCTA
GTGGTTATCAAGCAATCCTTTCTGTTTACTTGCTCACTACTGCATCCATC
CCCTCCCAAACTCTGATGGTTGGTTTTTTTTTTCCTGTATGCCTCTCTGC
ATCTTTCTCATGGTAGCATGAGGATTATGTGACACTCCTGTGGGTCTGCC
CTCCAAACAGTAGGTGCTGTTCAGTTAACCAGGGATTACCTGGGATTTGA
TGAATCACATGTGTTTGAAAGGGCAGAGCTCAAAGTCCATCTGAGAAGTG
GATACAAGGGACCCATTTTTGTCATTGTGGCCAGTGTCTGAGATGGCACC
TGTGTGACTTGTTTTCTCTGTGCATAAAAGGAGATTTAATCAGAACACCC
CAGACAGGTTGCACTACTGGCTGGCATAAGGCTGAAGAATATCCCCAAAG
TCTCTGAAAGAAAGTCTTTAAAA

TCTTTTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATA
CCTAATGGCTGAGAAGGACCTGAAGAAATGTTCAACATCCTTAATCCTCA
GGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAAACCAGTCAGA
ATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAC
CACTCTGGAAATCAGTCTGGCAGACCTCAGAAAATTGGACATAGTATTAC
CAGAGGATCCTTCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCA
ACTGTTAAGAAGTACACATGTTCCACTATGTTCATAGCAGCCTTATTTAT
AATTGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAAGGGA
TACAGAAAGTGTGGTACATTTACACAATGGAGAACTAACTACTCAGCTAT
AAAAAAGAATGAATTGATAAAATTCCTAAGCAAGTGGAAGGACCTGGAGG
GCATCCTCCTGAGTGAGGTAACCCATTCACAAAAGAACTCCACCCTTATG
TACTCCCTGAAAAGTGGATATTTAGCCCAGAAACTTACAATACCCAAGAT
ATAAAATACAATTTTCCTAAAGTATGTAAC

Query= MSMg01no544_f18.b1 MSMg01no544_f18.b1 CHROMAT_FILE:
MSMg01no544_f18.b1 PHD_FILE: MSMg01no544_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:00 2005
         (569 letters)



>mm_chr8_76403722_76404691
          Length = 970

 Score = 1050 bits (543), Expect = 0.0
 Identities = 561/567 (98%), Gaps = 1/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcttcctctcgtatcctattggggtcactttttgtgaatgttcttcactgcaa 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttcctcaggtatcctattggggtcactttttgtgaatgttcttcactgcaa 263

                                                                       
Query: 64  ctatactggttctctatggctgcctccatgaagtatcatgaagtcaggtggtcagaaacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctatactggttctctatggctgcctccatgaagtatcatgaagtcaggtggtcagaaacc 323

                                                                       
Query: 124 atgcagagttcttattttatagatcataatctcactgtctgaagtcaagttgtaaggagg 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 atgcagagttcttattttatagatcataatctcactgtctgaattcaagttgtaaggagg 383

                                                                       
Query: 184 gctagtcttgtgttctctggaggttctagaggaggaaccttccttgcctccccctaggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctagtcttgtgttctctggaggttctagaggaggaaccttccttgcctccccctaggtt 443

                                                                       
Query: 244 ctagtggttatcaagcaatcctttctgtttacttgctcactactgcatccatcccctccc 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcgtggttatcaagcaatcctttctgtttacttgctcactactgcatccatcccctccc 503

                                                                       
Query: 304 aaactctgatggttggttttttttttcc-tgtatgcctctctgcatctttctcatggtag 362
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 aacctctgatggttggttttttttttccctgtatgcctctctgcatctttctcatggtag 563

                                                                       
Query: 363 catgaggattatgtgacactcctgtgggtctgccctccaaacagtaggtgctgttcagtt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catgaggattatgtgacactcctgtgggtctgccctccaaacagtaggtgctgttcagtt 623

                                                                       
Query: 423 aaccagggattacctgggatttgatgaatcacatgtgtttgaaagggcagagctcaaagt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaccagggattacctgggatttgatgaatcacatgtgtttgaaagggcagagctcaaagt 683

                                                                       
Query: 483 ccatctgagaagtggatacaagggacccatttttgtcattgtggccagtgtctgagatgg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatctgagaagtggatacaagggacccatttttgtcattgtggccagtgtctgagatgg 743

                                      
Query: 543 cacctgtgtgacttgttttctctgtgc 569
           |||||||||||||||||||||||||||
Sbjct: 744 cacctgtgtgacttgttttctctgtgc 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space:   536640
Effective search space used:   536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)