BAC Information

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BAC

Clone NameMSMg01-545H17
Chromosome8 (Build37)
Map Location 93,677,241 - 93,847,382
singlet/doubletdoublet
Overlap geneLOC667162, LOC100041222, Rpgrip1l, AJ237917
Upstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545H17.T7 (MSMg01no545_h17.b1)MSMg01-545H17.TJ (MSMg01no545_h17.g1)
ACCAG610533AG610534
length756749
length of high quality
(start - end)		633 (34 - 666)631 (65 - 695)
definitionCHROMAT_FILE: MSMg01no545_h17.b1 PHD_FILE: MSMg01no545_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:27 2005CHROMAT_FILE: MSMg01no545_h17.g1 PHD_FILE: MSMg01no545_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,677,241 - 93,677,869)(93,846,794 - 93,847,382)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTACAC
ATAATTTTCTGAACGTCCCAGCTGAGCAACAAAGCCCACTGCAGTCTCTG
CTGCTCCTCTTGATGCTGAAGCTACGTAGGAGGCACAGCTTGCAGCTGCC
ACCACCCAGATGCGAGAGATAAGACCAGGCTATACATCACTAGCCTTGTG
TTATAGTTAGCTACCATCAACTTTACATAAACCCGAGAAGAGCTAGAACC
TCCTTGAAGAATCACCCTTATCAAATCGGCCCCTGAGTGTGTCTGCGAGT
ATTTTCTCCCTTGTCAACTGGTGTGAGAGGCCCCAGAGCATTGTGGGTAG
CTGGGCCTGAGCAGTATAAGCAAGCTAGTTGGGCTAGCCAGTAAGCAGTG
TCCCTCCATGTTTTCTGCTTCAGTTTCTGCCTTGGCTTTTCTGGAGGATG
GGCTGTGACACAGAAGTGTAAGTTAAAATAAACACCTTTTCCTCCCCTAA
GCTGGTTTTGGTCAGTGTTTTAATCACAAGAGAAAAGCAAATGAAGACAC
CATAGAATAGATTAAAATTCAAAACCCATTGTATGATCTCTGCAGAAGGT
GTTTGTTTTCATACTGCTTTCTTTTTTAGAAGTATTCCTTTATTTTTATT
TCATGTGTATTTTTGCCTGTTTATTAGGCTCTGTACAACATGCATGCAGT
ATCAGCAGAGGCCAGAAGAGGGCGGCAGATCTCCAGGAACTAGAGTTATA
GAACAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATCTTGAAAATCAACATAAAACAGGCTGAAATAAT
AGAAAGCAACAGCAATTGCTCTTACTCAATTGTATCGCATGTTAAATGTC
CAGGAGGTACTTCAAGGGATTTGGAAACTAGAACTGAATAACCAAGGCAA
CAAATCAGAGTGAAGGTGGTCGTTCGTACTGGAGAAGACATGCAACAGAT
GAAGGAGGATTAGGGAGAGGAAGGAAAACAAAAGGGGGCAGAGAAGGGTC
CATCAGCTGTGGTTCTAAGTACCCGAGACAGTGAGATATCTGCACCGGGT
CGGTCTTCATCCCGATTTCCATATATATCCAAAAACCGTGGGCTCCTGCA
AGTCTGGTCATGCGATGCTGGCCACATGGCAGCTGCAGAGCAAGGCCAAC
AAGGCTGGGGCTTAGAAAACGGGGTCCTGATGTGGGATGCTGCGGCTTGC
CTGAGTACTTTGAACTAAAAGACAAGGAAGGCTTTAGAACCTAAGAACCA
TGCTTTCTCTGACCTCCTGCCCCGCTTCTTCCCAGAAGTTCAAACCAAGA
TTCCTCTCACCCAGGATGAGTCACTGTAACTCGAAGCCCCACTTCCCAAA
ACAAAACATAACGCCTAAAAGTCTTACTGTCAACTTCTTCCCCAAGGCCA
TAGCCAAACTGACTCACATGAGATCAAAGACCCTCATTGCANGAAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_h17.b1 MSMg01no545_h17.b1 CHROMAT_FILE:
MSMg01no545_h17.b1 PHD_FILE: MSMg01no545_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:27 2005
         (633 letters)



>mm_chr8_93677037_93678069
          Length = 1033

 Score = 1216 bits (629), Expect = 0.0
 Identities = 629/629 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttacacataattttctgaacgtcccagctgagcaacaaagcccactgcagtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttacacataattttctgaacgtcccagctgagcaacaaagcccactgcagtct 264

                                                                       
Query: 65  ctgctgctcctcttgatgctgaagctacgtaggaggcacagcttgcagctgccaccaccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgctgctcctcttgatgctgaagctacgtaggaggcacagcttgcagctgccaccaccc 324

                                                                       
Query: 125 agatgcgagagataagaccaggctatacatcactagccttgtgttatagttagctaccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatgcgagagataagaccaggctatacatcactagccttgtgttatagttagctaccat 384

                                                                       
Query: 185 caactttacataaacccgagaagagctagaacctccttgaagaatcacccttatcaaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caactttacataaacccgagaagagctagaacctccttgaagaatcacccttatcaaatc 444

                                                                       
Query: 245 ggcccctgagtgtgtctgcgagtattttctcccttgtcaactggtgtgagaggccccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcccctgagtgtgtctgcgagtattttctcccttgtcaactggtgtgagaggccccaga 504

                                                                       
Query: 305 gcattgtgggtagctgggcctgagcagtataagcaagctagttgggctagccagtaagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcattgtgggtagctgggcctgagcagtataagcaagctagttgggctagccagtaagca 564

                                                                       
Query: 365 gtgtccctccatgttttctgcttcagtttctgccttggcttttctggaggatgggctgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgtccctccatgttttctgcttcagtttctgccttggcttttctggaggatgggctgtg 624

                                                                       
Query: 425 acacagaagtgtaagttaaaataaacaccttttcctcccctaagctggttttggtcagtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacagaagtgtaagttaaaataaacaccttttcctcccctaagctggttttggtcagtg 684

                                                                       
Query: 485 ttttaatcacaagagaaaagcaaatgaagacaccatagaatagattaaaattcaaaaccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttaatcacaagagaaaagcaaatgaagacaccatagaatagattaaaattcaaaaccc 744

                                                                       
Query: 545 attgtatgatctctgcagaaggtgtttgttttcatactgctttcttttttagaagtattc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attgtatgatctctgcagaaggtgtttgttttcatactgctttcttttttagaagtattc 804

                                        
Query: 605 ctttatttttatttcatgtgtatttttgc 633
           |||||||||||||||||||||||||||||
Sbjct: 805 ctttatttttatttcatgtgtatttttgc 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_h17.g1 MSMg01no545_h17.g1 CHROMAT_FILE:
MSMg01no545_h17.g1 PHD_FILE: MSMg01no545_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:27 2005
         (631 letters)



>mm_chr8_93846794_93847824
          Length = 1031

 Score = 1139 bits (589), Expect = 0.0
 Identities = 589/589 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcttgaaaatcaacataaaacaggctgaaataatagaaagcaacagcaattgctctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 catcttgaaaatcaacataaaacaggctgaaataatagaaagcaacagcaattgctctta 530

                                                                       
Query: 61  ctcaattgtatcgcatgttaaatgtccaggaggtacttcaagggatttggaaactagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctcaattgtatcgcatgttaaatgtccaggaggtacttcaagggatttggaaactagaac 470

                                                                       
Query: 121 tgaataaccaaggcaacaaatcagagtgaaggtggtcgttcgtactggagaagacatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgaataaccaaggcaacaaatcagagtgaaggtggtcgttcgtactggagaagacatgca 410

                                                                       
Query: 181 acagatgaaggaggattagggagaggaaggaaaacaaaagggggcagagaagggtccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acagatgaaggaggattagggagaggaaggaaaacaaaagggggcagagaagggtccatc 350

                                                                       
Query: 241 agctgtggttctaagtacccgagacagtgagatatctgcaccgggtcggtcttcatcccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agctgtggttctaagtacccgagacagtgagatatctgcaccgggtcggtcttcatcccg 290

                                                                       
Query: 301 atttccatatatatccaaaaaccgtgggctcctgcaagtctggtcatgcgatgctggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atttccatatatatccaaaaaccgtgggctcctgcaagtctggtcatgcgatgctggcca 230

                                                                       
Query: 361 catggcagctgcagagcaaggccaacaaggctggggcttagaaaacggggtcctgatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 catggcagctgcagagcaaggccaacaaggctggggcttagaaaacggggtcctgatgtg 170

                                                                       
Query: 421 ggatgctgcggcttgcctgagtactttgaactaaaagacaaggaaggctttagaacctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ggatgctgcggcttgcctgagtactttgaactaaaagacaaggaaggctttagaacctaa 110

                                                                       
Query: 481 gaaccatgctttctctgacctcctgccccgcttcttcccagaagttcaaaccaagattcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gaaccatgctttctctgacctcctgccccgcttcttcccagaagttcaaaccaagattcc 50

                                                            
Query: 541 tctcacccaggatgagtcactgtaactcgaagccccacttcccaaaaca 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tctcacccaggatgagtcactgtaactcgaagccccacttcccaaaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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